miRNA display CGI


Results 41 - 60 of 384 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 3' -54.2 NC_005261.1 + 72778 0.66 0.947841
Target:  5'- cGGcCGCGCaCGCGuccggGGcCGCGGACA-CGUCc -3'
miRNA:   3'- -CC-GCGUG-GUGC-----UC-GUGCUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 31314 0.66 0.947841
Target:  5'- cGGgGC-CCGCGGGCGCGcuCGcCGcCa -3'
miRNA:   3'- -CCgCGuGGUGCUCGUGCuuGUaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 127574 0.66 0.947841
Target:  5'- cGGCccGCACCA-GGGCGCccuGGGCGUCuUCg -3'
miRNA:   3'- -CCG--CGUGGUgCUCGUG---CUUGUAGcAG- -5'
23598 3' -54.2 NC_005261.1 + 104398 0.66 0.947841
Target:  5'- aGGCGCGCCAUaaAGCGCGccgaAACggCGcCg -3'
miRNA:   3'- -CCGCGUGGUGc-UCGUGC----UUGuaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 81533 0.66 0.947841
Target:  5'- aGGCGCugcaggACCGCguaGAGCAgcgaGAACA-CGUCc -3'
miRNA:   3'- -CCGCG------UGGUG---CUCGUg---CUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 87369 0.66 0.947841
Target:  5'- aGCGCccACCGCGcGGCAgauguccuCGGcCGUCGUCu -3'
miRNA:   3'- cCGCG--UGGUGC-UCGU--------GCUuGUAGCAG- -5'
23598 3' -54.2 NC_005261.1 + 96595 0.66 0.947841
Target:  5'- cGGCGCucuGCCGC-AGCACGucGCG-CGUg -3'
miRNA:   3'- -CCGCG---UGGUGcUCGUGCu-UGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 104307 0.66 0.947841
Target:  5'- cGCGCGCUcaaaGAGCgcGCGGACGcgcgCGUCc -3'
miRNA:   3'- cCGCGUGGug--CUCG--UGCUUGUa---GCAG- -5'
23598 3' -54.2 NC_005261.1 + 106961 0.66 0.947841
Target:  5'- gGGCGCGCUccgccucgGCGcGCGCGccgcGCAccgCGUCg -3'
miRNA:   3'- -CCGCGUGG--------UGCuCGUGCu---UGUa--GCAG- -5'
23598 3' -54.2 NC_005261.1 + 107682 0.66 0.947841
Target:  5'- gGGCGUugccGCCGCGGcgggggcgccGC-CGAACGUCGc- -3'
miRNA:   3'- -CCGCG----UGGUGCU----------CGuGCUUGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 126948 0.66 0.947841
Target:  5'- aGGgGCGCCGgGcgcgggggcggcAGCGCGAACcgCG-Cg -3'
miRNA:   3'- -CCgCGUGGUgC------------UCGUGCUUGuaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 118792 0.66 0.947841
Target:  5'- cGGCGCGCUgAUGGcGCACGuggg-CGUCu -3'
miRNA:   3'- -CCGCGUGG-UGCU-CGUGCuuguaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 135764 0.66 0.947841
Target:  5'- cGGUGCGCUccggcGCaGAGCGCGuGCcgCuGUCg -3'
miRNA:   3'- -CCGCGUGG-----UG-CUCGUGCuUGuaG-CAG- -5'
23598 3' -54.2 NC_005261.1 + 16716 0.66 0.946528
Target:  5'- cGCGCGCCgguacuggcccucgGCGAGCcgcGCGGGCGcCGcCa -3'
miRNA:   3'- cCGCGUGG--------------UGCUCG---UGCUUGUaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 121842 0.66 0.945193
Target:  5'- cGGCGCACCGgCGccAGCAgcccgcggcucccgcCGAgccGCAUCGa- -3'
miRNA:   3'- -CCGCGUGGU-GC--UCGU---------------GCU---UGUAGCag -5'
23598 3' -54.2 NC_005261.1 + 68127 0.66 0.94338
Target:  5'- cGCGgGCCGCG-GCGCGGcgACcgCGcCg -3'
miRNA:   3'- cCGCgUGGUGCuCGUGCU--UGuaGCaG- -5'
23598 3' -54.2 NC_005261.1 + 133826 0.66 0.94338
Target:  5'- aGGCGCugCGCGGcCGCGugcGCGcCGUg -3'
miRNA:   3'- -CCGCGugGUGCUcGUGCu--UGUaGCAg -5'
23598 3' -54.2 NC_005261.1 + 125301 0.66 0.94338
Target:  5'- gGGCGCcggacCCGCGGGCGCuccGCGgccucggCGUCc -3'
miRNA:   3'- -CCGCGu----GGUGCUCGUGcu-UGUa------GCAG- -5'
23598 3' -54.2 NC_005261.1 + 124307 0.66 0.94338
Target:  5'- uGCGCACUACGcGCAgcAGCG-CGUCc -3'
miRNA:   3'- cCGCGUGGUGCuCGUgcUUGUaGCAG- -5'
23598 3' -54.2 NC_005261.1 + 107381 0.66 0.94338
Target:  5'- gGGCGC-CCGCGucCACGAACGg---- -3'
miRNA:   3'- -CCGCGuGGUGCucGUGCUUGUagcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.