miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 5' -55.5 NC_005261.1 + 91955 1.12 0.001898
Target:  5'- gGCGACGAUCUUGUACCCGGCGCAGGCc -3'
miRNA:   3'- -CGCUGCUAGAACAUGGGCCGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 48492 0.81 0.230092
Target:  5'- gGCGACGAUCUcGUGCuuG-CGCAGGUu -3'
miRNA:   3'- -CGCUGCUAGAaCAUGggCcGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 33780 0.8 0.253431
Target:  5'- cGCGGCGAgcgCUgg-GCCCcGCGCGGGCg -3'
miRNA:   3'- -CGCUGCUa--GAacaUGGGcCGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 57496 0.77 0.358307
Target:  5'- cGCGACGggCacGU-CCCGGCGgCGGGCc -3'
miRNA:   3'- -CGCUGCuaGaaCAuGGGCCGC-GUCCG- -5'
23598 5' -55.5 NC_005261.1 + 31857 0.77 0.371949
Target:  5'- cGCGGCGcGUCUUcggGCCCGGCGCcuucgcgcgcgccgAGGCc -3'
miRNA:   3'- -CGCUGC-UAGAAca-UGGGCCGCG--------------UCCG- -5'
23598 5' -55.5 NC_005261.1 + 88828 0.77 0.374393
Target:  5'- gGCGGCGcgCgccgGCCCGGCGUcGGCu -3'
miRNA:   3'- -CGCUGCuaGaacaUGGGCCGCGuCCG- -5'
23598 5' -55.5 NC_005261.1 + 121061 0.76 0.390961
Target:  5'- uGUGGCGcgCggUGUGCgCGGCGCcGGCg -3'
miRNA:   3'- -CGCUGCuaGa-ACAUGgGCCGCGuCCG- -5'
23598 5' -55.5 NC_005261.1 + 69512 0.76 0.390961
Target:  5'- gGCGGCGggCUgccggAgCUGGCGCGGGCg -3'
miRNA:   3'- -CGCUGCuaGAaca--UgGGCCGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 109123 0.76 0.399423
Target:  5'- gGCGGCGGUgUcGUGCgCGGCcccagGCAGGCg -3'
miRNA:   3'- -CGCUGCUAgAaCAUGgGCCG-----CGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 133263 0.76 0.399423
Target:  5'- gGCGGCGcgCgaGUACCagGGCGCcGGCg -3'
miRNA:   3'- -CGCUGCuaGaaCAUGGg-CCGCGuCCG- -5'
23598 5' -55.5 NC_005261.1 + 120635 0.76 0.416693
Target:  5'- gGUGGCGGcCcUGUGCCUgcggcgcaaGGCGCGGGCg -3'
miRNA:   3'- -CGCUGCUaGaACAUGGG---------CCGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 47553 0.75 0.452558
Target:  5'- cGCGGCGAagUUggcGUGCCCGucGCGCAuGGCg -3'
miRNA:   3'- -CGCUGCUagAA---CAUGGGC--CGCGU-CCG- -5'
23598 5' -55.5 NC_005261.1 + 46717 0.75 0.461786
Target:  5'- cGCGACGAcggcCUcGUACgCCGGCGCGuGCa -3'
miRNA:   3'- -CGCUGCUa---GAaCAUG-GGCCGCGUcCG- -5'
23598 5' -55.5 NC_005261.1 + 88548 0.75 0.480531
Target:  5'- -aGACGAcCgaGUACCCGaGCGCcGGCg -3'
miRNA:   3'- cgCUGCUaGaaCAUGGGC-CGCGuCCG- -5'
23598 5' -55.5 NC_005261.1 + 135081 0.75 0.480531
Target:  5'- gGCGGCGggCUcGcgGCCCGGCgGCGGaGCg -3'
miRNA:   3'- -CGCUGCuaGAaCa-UGGGCCG-CGUC-CG- -5'
23598 5' -55.5 NC_005261.1 + 73340 0.74 0.519079
Target:  5'- aCGACGucGUCUcc-GCCCGGCGCcGGCu -3'
miRNA:   3'- cGCUGC--UAGAacaUGGGCCGCGuCCG- -5'
23598 5' -55.5 NC_005261.1 + 130492 0.74 0.519079
Target:  5'- gGCGGCGAgg----GCCCcgacgacguGGCGCAGGCg -3'
miRNA:   3'- -CGCUGCUagaacaUGGG---------CCGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 72593 0.74 0.538809
Target:  5'- -gGGCGAUCggcgcgcaaaUGUACCgGGCggGCGGGCg -3'
miRNA:   3'- cgCUGCUAGa---------ACAUGGgCCG--CGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 32165 0.74 0.538809
Target:  5'- uGCGGCcgg--UGUACCUGGCcuGCGGGCg -3'
miRNA:   3'- -CGCUGcuagaACAUGGGCCG--CGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 18786 0.73 0.548771
Target:  5'- aGCGGCGAgg--GUGCCggcuugagCGGCGgCGGGCa -3'
miRNA:   3'- -CGCUGCUagaaCAUGG--------GCCGC-GUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.