miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23598 5' -55.5 NC_005261.1 + 340 0.71 0.670841
Target:  5'- uGCGGCGGcccgcaGCCCGGCGCGgcccGGCg -3'
miRNA:   3'- -CGCUGCUagaacaUGGGCCGCGU----CCG- -5'
23598 5' -55.5 NC_005261.1 + 607 0.67 0.878432
Target:  5'- cGCGGaGggCgaGUGCCCGaCGCAGGg -3'
miRNA:   3'- -CGCUgCuaGaaCAUGGGCcGCGUCCg -5'
23598 5' -55.5 NC_005261.1 + 2147 0.69 0.806112
Target:  5'- cCGGCGcgCccGUccaggACCCGGCcCAGGCg -3'
miRNA:   3'- cGCUGCuaGaaCA-----UGGGCCGcGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 2688 0.69 0.797184
Target:  5'- gGCGGCGcgccggCUUuUGgCCGGCGcCGGGCc -3'
miRNA:   3'- -CGCUGCua----GAAcAUgGGCCGC-GUCCG- -5'
23598 5' -55.5 NC_005261.1 + 3894 0.68 0.840162
Target:  5'- uCGGCGA------GCgCGGCGCGGGCg -3'
miRNA:   3'- cGCUGCUagaacaUGgGCCGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 4409 0.68 0.831914
Target:  5'- gGCGGCGcgCU---GCCgGGC-CAGGCc -3'
miRNA:   3'- -CGCUGCuaGAacaUGGgCCGcGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 4481 0.69 0.797184
Target:  5'- cGCGGCGccgCggcGUAgCCuGCGCGGGCc -3'
miRNA:   3'- -CGCUGCua-Gaa-CAUgGGcCGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 4535 0.68 0.847424
Target:  5'- cGCGGCGAgggCgccgGgcCCUGGCcuuggcuggauccGCGGGCg -3'
miRNA:   3'- -CGCUGCUa--Gaa--CauGGGCCG-------------CGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 4583 0.67 0.896209
Target:  5'- cCGGCGGggcgcccCCCGGCGCcaGGGCu -3'
miRNA:   3'- cGCUGCUagaacauGGGCCGCG--UCCG- -5'
23598 5' -55.5 NC_005261.1 + 4972 0.69 0.814881
Target:  5'- cGCGGCGuccUCUgggGCCCggagGGCGCcgAGGCc -3'
miRNA:   3'- -CGCUGCu--AGAacaUGGG----CCGCG--UCCG- -5'
23598 5' -55.5 NC_005261.1 + 6225 0.68 0.856084
Target:  5'- cUGGCGGUCcaggUGcGCCCGGgGaGGGCc -3'
miRNA:   3'- cGCUGCUAGa---ACaUGGGCCgCgUCCG- -5'
23598 5' -55.5 NC_005261.1 + 7885 0.67 0.863744
Target:  5'- aGCGAgCGGcUC-UGU-UCCGGCGCGGcGCc -3'
miRNA:   3'- -CGCU-GCU-AGaACAuGGGCCGCGUC-CG- -5'
23598 5' -55.5 NC_005261.1 + 10530 0.72 0.608492
Target:  5'- cGCGGCGcgCUcgcUGUcgccCCCGGCGCgccugccGGGCc -3'
miRNA:   3'- -CGCUGCuaGA---ACAu---GGGCCGCG-------UCCG- -5'
23598 5' -55.5 NC_005261.1 + 10871 0.7 0.7408
Target:  5'- aCGACGuguUCUUccccGaGCCCGGCGCcaacGGCg -3'
miRNA:   3'- cGCUGCu--AGAA----CaUGGGCCGCGu---CCG- -5'
23598 5' -55.5 NC_005261.1 + 11949 0.72 0.650435
Target:  5'- cGCGGCGG-CUc--GCCCGGCGCGcGCu -3'
miRNA:   3'- -CGCUGCUaGAacaUGGGCCGCGUcCG- -5'
23598 5' -55.5 NC_005261.1 + 12329 0.67 0.871195
Target:  5'- gGCG-CGcgCUUGg--CCGGCGC-GGCc -3'
miRNA:   3'- -CGCuGCuaGAACaugGGCCGCGuCCG- -5'
23598 5' -55.5 NC_005261.1 + 13433 0.68 0.831914
Target:  5'- cGCG-CG-UCg---ACCgGGUGCAGGCa -3'
miRNA:   3'- -CGCuGCuAGaacaUGGgCCGCGUCCG- -5'
23598 5' -55.5 NC_005261.1 + 14511 0.67 0.892242
Target:  5'- cGCGAaaccaAUUUaacaGCCCGGCGguGGCg -3'
miRNA:   3'- -CGCUgc---UAGAaca-UGGGCCGCguCCG- -5'
23598 5' -55.5 NC_005261.1 + 14858 0.67 0.871195
Target:  5'- gGCGGCGcAUCgcgcaGUucGCCaucgCGGCGCAGaGCg -3'
miRNA:   3'- -CGCUGC-UAGaa---CA--UGG----GCCGCGUC-CG- -5'
23598 5' -55.5 NC_005261.1 + 15630 0.69 0.788108
Target:  5'- uCGACGGUCccgUUGUagcgccGCCCGGC-CGGGa -3'
miRNA:   3'- cGCUGCUAG---AACA------UGGGCCGcGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.