miRNA display CGI


Results 1 - 20 of 758 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23602 3' -65.1 NC_005261.1 + 90786 1.1 0.000329
Target:  5'- gCUGCGGCGGCCGGCGCGCGCUACCGCg -3'
miRNA:   3'- -GACGCCGCCGGCCGCGCGCGAUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 83078 0.87 0.017623
Target:  5'- -cGCGGCGGCCGGCGCuuccagcgccuccaGCGCcGCCGCc -3'
miRNA:   3'- gaCGCCGCCGGCCGCG--------------CGCGaUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 133834 0.87 0.018566
Target:  5'- -cGCGGCcgcgugcgcgccguGGCCGGCGCGCGCgacUGCCGCg -3'
miRNA:   3'- gaCGCCG--------------CCGGCCGCGCGCG---AUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 134096 0.87 0.019206
Target:  5'- uCU-CGGCGcGCCGGCGCGCGCUcGCCGCc -3'
miRNA:   3'- -GAcGCCGC-CGGCCGCGCGCGA-UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 11949 0.86 0.020232
Target:  5'- -cGCGGCGGCucgccCGGCGCGCGCUccagcgcagcaGCCGCg -3'
miRNA:   3'- gaCGCCGCCG-----GCCGCGCGCGA-----------UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 79833 0.86 0.022452
Target:  5'- -cGCGGCGGCCaGCGCaGCGCUagccGCCGCg -3'
miRNA:   3'- gaCGCCGCCGGcCGCG-CGCGA----UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 73798 0.85 0.02365
Target:  5'- -cGCGGCGGUCGGCGCGCaGaaGCCGCg -3'
miRNA:   3'- gaCGCCGCCGGCCGCGCG-CgaUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 29868 0.85 0.026239
Target:  5'- -cGCGGC-GCCGGCGC-CGCUGCCGCc -3'
miRNA:   3'- gaCGCCGcCGGCCGCGcGCGAUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 117464 0.84 0.028363
Target:  5'- gUGCGGCaGGUCGGCGgcgaCGCGCUGCUGCg -3'
miRNA:   3'- gACGCCG-CCGGCCGC----GCGCGAUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 75581 0.84 0.029872
Target:  5'- -gGCGGCGGCgCGGCGCucGCGCgcGCCGCg -3'
miRNA:   3'- gaCGCCGCCG-GCCGCG--CGCGa-UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 22800 0.84 0.032285
Target:  5'- uUGUcGCGGCCGGCgGCgGCGCUGCCGCc -3'
miRNA:   3'- gACGcCGCCGGCCG-CG-CGCGAUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 109800 0.84 0.032285
Target:  5'- gCUGCGaCGGCCGGCGC-CGCUuccGCCGCg -3'
miRNA:   3'- -GACGCcGCCGGCCGCGcGCGA---UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 44210 0.82 0.038684
Target:  5'- gCUGCaGGCGGCCcgggaGCGCGCGCUgcugGCCGCc -3'
miRNA:   3'- -GACG-CCGCCGGc----CGCGCGCGA----UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 60192 0.82 0.038684
Target:  5'- -cGCGGCGGagaaguCCGcGCGCGCGCUcccGCCGCg -3'
miRNA:   3'- gaCGCCGCC------GGC-CGCGCGCGA---UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 118576 0.82 0.04073
Target:  5'- -cGCGcGCGG-CGGCGCGCGCcGCCGCc -3'
miRNA:   3'- gaCGC-CGCCgGCCGCGCGCGaUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 76590 0.82 0.044
Target:  5'- -cGCGaGCGGgUGGCGCGCGCgcUGCCGCc -3'
miRNA:   3'- gaCGC-CGCCgGCCGCGCGCG--AUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 106549 0.82 0.044
Target:  5'- -gGCGGCcgcguccgGGCCGGCGCGCGCcggccccgggGCCGCc -3'
miRNA:   3'- gaCGCCG--------CCGGCCGCGCGCGa---------UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 51813 0.82 0.044
Target:  5'- gUGCuGCGGCUGGUGCGCGCcUGCCuGCa -3'
miRNA:   3'- gACGcCGCCGGCCGCGCGCG-AUGG-CG- -5'
23602 3' -65.1 NC_005261.1 + 127794 0.81 0.050027
Target:  5'- -aGCGGCgGGCCGGCGcCGCGgCggcggGCCGCu -3'
miRNA:   3'- gaCGCCG-CCGGCCGC-GCGC-Ga----UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 44024 0.81 0.051326
Target:  5'- -cGCGGCGGgCGGcCGcCGCGCggcgGCCGCg -3'
miRNA:   3'- gaCGCCGCCgGCC-GC-GCGCGa---UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.