miRNA display CGI


Results 1 - 20 of 758 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23602 3' -65.1 NC_005261.1 + 78 0.68 0.397095
Target:  5'- -cGCGGgGGCggggugCGGgGCGCGCccccgggccccGCCGCc -3'
miRNA:   3'- gaCGCCgCCG------GCCgCGCGCGa----------UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 171 0.69 0.311291
Target:  5'- -gGCGG-GGCUGGCGCcccugGUGCUcccggggccagcgguGCCGCc -3'
miRNA:   3'- gaCGCCgCCGGCCGCG-----CGCGA---------------UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 254 0.78 0.087477
Target:  5'- gCUGCGGCGGCggcugCGGCG-GCGgCUGCgGCg -3'
miRNA:   3'- -GACGCCGCCG-----GCCGCgCGC-GAUGgCG- -5'
23602 3' -65.1 NC_005261.1 + 290 0.78 0.087477
Target:  5'- gCUGCGGCGGCggcugCGGCG-GCGgCUGCgGCg -3'
miRNA:   3'- -GACGCCGCCG-----GCCGCgCGC-GAUGgCG- -5'
23602 3' -65.1 NC_005261.1 + 338 0.76 0.112267
Target:  5'- gCUGCGGCGGCCcgcagcccGGCGCG-GCccgGCgGCg -3'
miRNA:   3'- -GACGCCGCCGG--------CCGCGCgCGa--UGgCG- -5'
23602 3' -65.1 NC_005261.1 + 377 0.67 0.405172
Target:  5'- -gGCGGCGGUggCGGCG-GCgGCgGCgGCg -3'
miRNA:   3'- gaCGCCGCCG--GCCGCgCG-CGaUGgCG- -5'
23602 3' -65.1 NC_005261.1 + 553 0.67 0.413351
Target:  5'- -gGCGGCucGGCCGcCGCGCGgUGacacuaCGCu -3'
miRNA:   3'- gaCGCCG--CCGGCcGCGCGCgAUg-----GCG- -5'
23602 3' -65.1 NC_005261.1 + 639 0.72 0.220203
Target:  5'- -gGCGGCGGCCGccaGCGCcGCGUccCCGg -3'
miRNA:   3'- gaCGCCGCCGGC---CGCG-CGCGauGGCg -5'
23602 3' -65.1 NC_005261.1 + 1043 0.73 0.174029
Target:  5'- -gGCGGCGGgCGGCG-GCGUUaGCgGCg -3'
miRNA:   3'- gaCGCCGCCgGCCGCgCGCGA-UGgCG- -5'
23602 3' -65.1 NC_005261.1 + 1184 0.71 0.234348
Target:  5'- -cGCGGCcggggccggGGCCgGGCGCGgCGCggaccccccgccgaUGCCGCc -3'
miRNA:   3'- gaCGCCG---------CCGG-CCGCGC-GCG--------------AUGGCG- -5'
23602 3' -65.1 NC_005261.1 + 1278 0.66 0.464473
Target:  5'- gUGcCGGCgcccaGGCCGGCG-GgGCUcCCGUn -3'
miRNA:   3'- gAC-GCCG-----CCGGCCGCgCgCGAuGGCG- -5'
23602 3' -65.1 NC_005261.1 + 1309 0.71 0.230609
Target:  5'- -cGcCGGCGG-CGGCaCGCGCUccgggacgccGCCGCg -3'
miRNA:   3'- gaC-GCCGCCgGCCGcGCGCGA----------UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 1414 0.74 0.14704
Target:  5'- -gGCGGCGGCgGGgGCGgCGC--CCGCc -3'
miRNA:   3'- gaCGCCGCCGgCCgCGC-GCGauGGCG- -5'
23602 3' -65.1 NC_005261.1 + 1448 0.78 0.081116
Target:  5'- -aGCGGCGGCgccuCGGCGUGCGgCUccagcagcgcgGCCGCg -3'
miRNA:   3'- gaCGCCGCCG----GCCGCGCGC-GA-----------UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 1501 0.68 0.389123
Target:  5'- -cGCcGCGGCCGGCagcucgucggGCGCcaGCUccagcgcgcGCCGCc -3'
miRNA:   3'- gaCGcCGCCGGCCG----------CGCG--CGA---------UGGCG- -5'
23602 3' -65.1 NC_005261.1 + 1602 0.72 0.210199
Target:  5'- -cGCGGUGGCUGGcCGCcuCGCccuCCGCg -3'
miRNA:   3'- gaCGCCGCCGGCC-GCGc-GCGau-GGCG- -5'
23602 3' -65.1 NC_005261.1 + 1691 0.67 0.413351
Target:  5'- -aGCcGCGGCa-GCaCGCGCUGCCGg -3'
miRNA:   3'- gaCGcCGCCGgcCGcGCGCGAUGGCg -5'
23602 3' -65.1 NC_005261.1 + 1721 0.7 0.276428
Target:  5'- -cGCGGCGGCacgggcaccgCGGUGCGCGg-GCCcagGCg -3'
miRNA:   3'- gaCGCCGCCG----------GCCGCGCGCgaUGG---CG- -5'
23602 3' -65.1 NC_005261.1 + 1828 0.73 0.169919
Target:  5'- -cGCGuaaGCGGCCucGGCGCGCGCgaaggcGCCGg -3'
miRNA:   3'- gaCGC---CGCCGG--CCGCGCGCGa-----UGGCg -5'
23602 3' -65.1 NC_005261.1 + 1877 0.67 0.413351
Target:  5'- -cGCgaGGCcaGCaCGGCGCGCGCcagcgcgcGCCGCu -3'
miRNA:   3'- gaCG--CCGc-CG-GCCGCGCGCGa-------UGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.