miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23602 5' -54.8 NC_005261.1 + 90822 1.08 0.004571
Target:  5'- uCUACGGCGACACGGACUCGGUCUUCGu -3'
miRNA:   3'- -GAUGCCGCUGUGCCUGAGCCAGAAGC- -5'
23602 5' -54.8 NC_005261.1 + 1721 0.75 0.513119
Target:  5'- -cGCGGCGGCACGGGCaccgCGGUgcgCGg -3'
miRNA:   3'- gaUGCCGCUGUGCCUGa---GCCAgaaGC- -5'
23602 5' -54.8 NC_005261.1 + 32076 0.74 0.562641
Target:  5'- -cGCGGCG-CugGGGCUCGGggagccggaCUUCGc -3'
miRNA:   3'- gaUGCCGCuGugCCUGAGCCa--------GAAGC- -5'
23602 5' -54.8 NC_005261.1 + 32452 0.72 0.6837
Target:  5'- --cCGGCacagucacccccgGGCACGGACUCGGgCUUCc -3'
miRNA:   3'- gauGCCG-------------CUGUGCCUGAGCCaGAAGc -5'
23602 5' -54.8 NC_005261.1 + 45227 0.72 0.684711
Target:  5'- -cGCGGUGcuCACcgccauggaGGACUUGGUCUUCGc -3'
miRNA:   3'- gaUGCCGCu-GUG---------CCUGAGCCAGAAGC- -5'
23602 5' -54.8 NC_005261.1 + 83384 0.71 0.744277
Target:  5'- -cGCGGCGAgCGCGGcCUCGGcCgaggCGa -3'
miRNA:   3'- gaUGCCGCU-GUGCCuGAGCCaGaa--GC- -5'
23602 5' -54.8 NC_005261.1 + 129766 0.71 0.744277
Target:  5'- --cCGGCGACcgcCGGGCUCGGcccggcCUUCGc -3'
miRNA:   3'- gauGCCGCUGu--GCCUGAGCCa-----GAAGC- -5'
23602 5' -54.8 NC_005261.1 + 24397 0.71 0.753916
Target:  5'- -gGCGGCGGgGCGGuccuggggGCUCGGaUCcUCGg -3'
miRNA:   3'- gaUGCCGCUgUGCC--------UGAGCC-AGaAGC- -5'
23602 5' -54.8 NC_005261.1 + 97748 0.7 0.80032
Target:  5'- -aGgGGCGGgGCGGGCUCGG-CggCGc -3'
miRNA:   3'- gaUgCCGCUgUGCCUGAGCCaGaaGC- -5'
23602 5' -54.8 NC_005261.1 + 102950 0.7 0.80032
Target:  5'- gCUGCGGCGGCggccGCGGGCgccgCGGgCUcCGc -3'
miRNA:   3'- -GAUGCCGCUG----UGCCUGa---GCCaGAaGC- -5'
23602 5' -54.8 NC_005261.1 + 35052 0.7 0.809181
Target:  5'- -aACGGCGGcCGCGcGGCggCGGUCUcCGc -3'
miRNA:   3'- gaUGCCGCU-GUGC-CUGa-GCCAGAaGC- -5'
23602 5' -54.8 NC_005261.1 + 75074 0.7 0.809181
Target:  5'- -cGCGcCGGCGgGGGCUCGGcgggcaucgUCUUCGg -3'
miRNA:   3'- gaUGCcGCUGUgCCUGAGCC---------AGAAGC- -5'
23602 5' -54.8 NC_005261.1 + 31348 0.69 0.817881
Target:  5'- gCUGCGGCGGCGCGuGGCcUGGaugUCGc -3'
miRNA:   3'- -GAUGCCGCUGUGC-CUGaGCCagaAGC- -5'
23602 5' -54.8 NC_005261.1 + 58077 0.69 0.817881
Target:  5'- -gACGGCGGCGCcaGGGCcCGcGUCcUCGg -3'
miRNA:   3'- gaUGCCGCUGUG--CCUGaGC-CAGaAGC- -5'
23602 5' -54.8 NC_005261.1 + 75581 0.69 0.842942
Target:  5'- -gGCGGCGGCGCGGcGCUCGcGcgCgccgCGg -3'
miRNA:   3'- gaUGCCGCUGUGCC-UGAGC-Ca-Gaa--GC- -5'
23602 5' -54.8 NC_005261.1 + 125708 0.68 0.865538
Target:  5'- --cCGGCGACggccgccGCGGGCUCGG-CUggGg -3'
miRNA:   3'- gauGCCGCUG-------UGCCUGAGCCaGAagC- -5'
23602 5' -54.8 NC_005261.1 + 127643 0.68 0.866286
Target:  5'- -gGCGGCGGCGCcgggGGGCgcgCGGg-UUCGg -3'
miRNA:   3'- gaUGCCGCUGUG----CCUGa--GCCagAAGC- -5'
23602 5' -54.8 NC_005261.1 + 2967 0.68 0.866286
Target:  5'- aCUAgGGCccgggcugaGGCugGGGCUCGGcCUggCGg -3'
miRNA:   3'- -GAUgCCG---------CUGugCCUGAGCCaGAa-GC- -5'
23602 5' -54.8 NC_005261.1 + 68283 0.68 0.86926
Target:  5'- -cGCGGCGgggccccggccgcggGCGCGGACcucugCGGccgCUUCGa -3'
miRNA:   3'- gaUGCCGC---------------UGUGCCUGa----GCCa--GAAGC- -5'
23602 5' -54.8 NC_005261.1 + 74576 0.68 0.880809
Target:  5'- -cGCGGU--CGCGGAC-CGcGUCUUCGu -3'
miRNA:   3'- gaUGCCGcuGUGCCUGaGC-CAGAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.