miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23602 5' -54.8 NC_005261.1 + 401 0.66 0.948632
Target:  5'- -gGCGGCGGCAgCGGuCcUGGUCccgCGa -3'
miRNA:   3'- gaUGCCGCUGU-GCCuGaGCCAGaa-GC- -5'
23602 5' -54.8 NC_005261.1 + 1721 0.75 0.513119
Target:  5'- -cGCGGCGGCACGGGCaccgCGGUgcgCGg -3'
miRNA:   3'- gaUGCCGCUGUGCCUGa---GCCAgaaGC- -5'
23602 5' -54.8 NC_005261.1 + 2967 0.68 0.866286
Target:  5'- aCUAgGGCccgggcugaGGCugGGGCUCGGcCUggCGg -3'
miRNA:   3'- -GAUgCCG---------CUGugCCUGAGCCaGAa-GC- -5'
23602 5' -54.8 NC_005261.1 + 5518 0.66 0.952754
Target:  5'- -aGCGGCGGCGaGGccGC-CGG-CUUCGg -3'
miRNA:   3'- gaUGCCGCUGUgCC--UGaGCCaGAAGC- -5'
23602 5' -54.8 NC_005261.1 + 12358 0.66 0.952754
Target:  5'- -cGCGGCGGCAacCGG---CGcGUCUUCGa -3'
miRNA:   3'- gaUGCCGCUGU--GCCugaGC-CAGAAGC- -5'
23602 5' -54.8 NC_005261.1 + 13091 0.66 0.929805
Target:  5'- --uCGGCGGgcgGCGGGCUCGGcUCgggggcgUCGg -3'
miRNA:   3'- gauGCCGCUg--UGCCUGAGCC-AGa------AGC- -5'
23602 5' -54.8 NC_005261.1 + 24397 0.71 0.753916
Target:  5'- -gGCGGCGGgGCGGuccuggggGCUCGGaUCcUCGg -3'
miRNA:   3'- gaUGCCGCUgUGCC--------UGAGCC-AGaAGC- -5'
23602 5' -54.8 NC_005261.1 + 31348 0.69 0.817881
Target:  5'- gCUGCGGCGGCGCGuGGCcUGGaugUCGc -3'
miRNA:   3'- -GAUGCCGCUGUGC-CUGaGCCagaAGC- -5'
23602 5' -54.8 NC_005261.1 + 32076 0.74 0.562641
Target:  5'- -cGCGGCG-CugGGGCUCGGggagccggaCUUCGc -3'
miRNA:   3'- gaUGCCGCuGugCCUGAGCCa--------GAAGC- -5'
23602 5' -54.8 NC_005261.1 + 32452 0.72 0.6837
Target:  5'- --cCGGCacagucacccccgGGCACGGACUCGGgCUUCc -3'
miRNA:   3'- gauGCCG-------------CUGUGCCUGAGCCaGAAGc -5'
23602 5' -54.8 NC_005261.1 + 32744 0.66 0.952754
Target:  5'- uCUGCGcGCGGCccgccgcucuACGGGCUCGGa----- -3'
miRNA:   3'- -GAUGC-CGCUG----------UGCCUGAGCCagaagc -5'
23602 5' -54.8 NC_005261.1 + 33780 0.66 0.934371
Target:  5'- -cGCGGCGagcgcugggccccGCGCGGGCggCGGgcuugUCUUUGg -3'
miRNA:   3'- gaUGCCGC-------------UGUGCCUGa-GCC-----AGAAGC- -5'
23602 5' -54.8 NC_005261.1 + 35052 0.7 0.809181
Target:  5'- -aACGGCGGcCGCGcGGCggCGGUCUcCGc -3'
miRNA:   3'- gaUGCCGCU-GUGC-CUGa-GCCAGAaGC- -5'
23602 5' -54.8 NC_005261.1 + 36635 0.68 0.89445
Target:  5'- -aACGGCGcgaagccggcGCGCGGGCUUGGggccagggUCGa -3'
miRNA:   3'- gaUGCCGC----------UGUGCCUGAGCCaga-----AGC- -5'
23602 5' -54.8 NC_005261.1 + 42617 0.67 0.918966
Target:  5'- -cGCGGCGcaaaguccaGCGgGGACUCGGcCgccgCGg -3'
miRNA:   3'- gaUGCCGC---------UGUgCCUGAGCCaGaa--GC- -5'
23602 5' -54.8 NC_005261.1 + 43371 0.66 0.944279
Target:  5'- gCUGCGGCGGCAuCGGcCUCGcGgugcCGg -3'
miRNA:   3'- -GAUGCCGCUGU-GCCuGAGC-CagaaGC- -5'
23602 5' -54.8 NC_005261.1 + 45227 0.72 0.684711
Target:  5'- -cGCGGUGcuCACcgccauggaGGACUUGGUCUUCGc -3'
miRNA:   3'- gaUGCCGCu-GUG---------CCUGAGCCAGAAGC- -5'
23602 5' -54.8 NC_005261.1 + 48678 0.66 0.948632
Target:  5'- -aACGGCGACuACGGGCccgCGGgccaUCa -3'
miRNA:   3'- gaUGCCGCUG-UGCCUGa--GCCaga-AGc -5'
23602 5' -54.8 NC_005261.1 + 49574 0.68 0.887742
Target:  5'- ---gGGCGugaACACGGGCUCGGggCgcgCGg -3'
miRNA:   3'- gaugCCGC---UGUGCCUGAGCCa-Gaa-GC- -5'
23602 5' -54.8 NC_005261.1 + 50994 0.66 0.929805
Target:  5'- -gACGGCGGCGCguGGGCgcggCGGgagCU-CGg -3'
miRNA:   3'- gaUGCCGCUGUG--CCUGa---GCCa--GAaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.