miRNA display CGI


Results 61 - 80 of 761 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23605 3' -64.8 NC_005261.1 + 129807 0.66 0.523318
Target:  5'- cGCGcucgcGCCCGCGcCCugCGCCcggaUGCCc -3'
miRNA:   3'- -CGCc----UGGGCGCaGGugGCGGcg--GCGG- -5'
23605 3' -64.8 NC_005261.1 + 50103 0.66 0.523318
Target:  5'- cGCuG-CCCGCG-CCG-CGCaggGCCGCCa -3'
miRNA:   3'- -CGcCuGGGCGCaGGUgGCGg--CGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 132004 0.66 0.523318
Target:  5'- cGCGGACggcgacaaCUGgG-CCGCCGUCacggacgugGCCGCCc -3'
miRNA:   3'- -CGCCUG--------GGCgCaGGUGGCGG---------CGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 104680 0.66 0.5224
Target:  5'- uGCGGcagcGCCUGgG-CCACCGCCccgaagaGCgGCUg -3'
miRNA:   3'- -CGCC----UGGGCgCaGGUGGCGG-------CGgCGG- -5'
23605 3' -64.8 NC_005261.1 + 79234 0.66 0.5224
Target:  5'- cGCGGcGCCCGCGgcgCCcagcacaACCGUgcccacUGCCuGCCc -3'
miRNA:   3'- -CGCC-UGGGCGCa--GG-------UGGCG------GCGG-CGG- -5'
23605 3' -64.8 NC_005261.1 + 45026 0.66 0.517821
Target:  5'- cGCGGuCCCGCGcuUCCucugcgagguCCGCgaaauccuggcgggGCCGCCc -3'
miRNA:   3'- -CGCCuGGGCGC--AGGu---------GGCGg-------------CGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 67409 0.66 0.51417
Target:  5'- -aGGACCaGCG-CCGCCagcagcgcCCGCgGCCa -3'
miRNA:   3'- cgCCUGGgCGCaGGUGGc-------GGCGgCGG- -5'
23605 3' -64.8 NC_005261.1 + 112713 0.66 0.51417
Target:  5'- uGCaGGACCUgGCGUUCcUCGUCGuCCGCa -3'
miRNA:   3'- -CG-CCUGGG-CGCAGGuGGCGGC-GGCGg -5'
23605 3' -64.8 NC_005261.1 + 796 0.66 0.51417
Target:  5'- ----cCCCGCG-CCGCCGCCccccacGCgCGCCc -3'
miRNA:   3'- cgccuGGGCGCaGGUGGCGG------CG-GCGG- -5'
23605 3' -64.8 NC_005261.1 + 36046 0.66 0.51417
Target:  5'- cCGcGACCCGCaGcCCACCG-CGCCacaCCa -3'
miRNA:   3'- cGC-CUGGGCG-CaGGUGGCgGCGGc--GG- -5'
23605 3' -64.8 NC_005261.1 + 19768 0.66 0.51417
Target:  5'- cGCGGGCCC-CGUCgCcUCGaacaCGCgGCCc -3'
miRNA:   3'- -CGCCUGGGcGCAG-GuGGCg---GCGgCGG- -5'
23605 3' -64.8 NC_005261.1 + 28573 0.66 0.51417
Target:  5'- cCGGGCCgaggcgCGCGagCGCCGgCggGCCGCCc -3'
miRNA:   3'- cGCCUGG------GCGCagGUGGCgG--CGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 46233 0.66 0.51417
Target:  5'- cGUGGACgagCGCGUcgcaggCCGCgGCgGCgGCCg -3'
miRNA:   3'- -CGCCUGg--GCGCA------GGUGgCGgCGgCGG- -5'
23605 3' -64.8 NC_005261.1 + 64117 0.66 0.51417
Target:  5'- aCGGGCggcaCGUG-CCG-CGCgGCCGCCa -3'
miRNA:   3'- cGCCUGg---GCGCaGGUgGCGgCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 105026 0.66 0.51417
Target:  5'- gGCGGuguccucuCCCGCucCCACCcCCGCC-CCu -3'
miRNA:   3'- -CGCCu-------GGGCGcaGGUGGcGGCGGcGG- -5'
23605 3' -64.8 NC_005261.1 + 48207 0.66 0.505993
Target:  5'- cGCGGGCCggcgcgcguuucagaGCGcgcaaaagUCUACCGCCcCCGCa -3'
miRNA:   3'- -CGCCUGGg--------------CGC--------AGGUGGCGGcGGCGg -5'
23605 3' -64.8 NC_005261.1 + 122986 0.66 0.505087
Target:  5'- gGUGGccuCCUGCagggCCACUacgGCCGCgGCCg -3'
miRNA:   3'- -CGCCu--GGGCGca--GGUGG---CGGCGgCGG- -5'
23605 3' -64.8 NC_005261.1 + 71111 0.66 0.505087
Target:  5'- aCGGcgcgcagcuugcGCCCGCGcgCCACgacgcucucaagCGCCGCC-CCg -3'
miRNA:   3'- cGCC------------UGGGCGCa-GGUG------------GCGGCGGcGG- -5'
23605 3' -64.8 NC_005261.1 + 82824 0.66 0.505087
Target:  5'- cCGGugCCGCGcUCC-CgCGCgGCaagCGCCu -3'
miRNA:   3'- cGCCugGGCGC-AGGuG-GCGgCG---GCGG- -5'
23605 3' -64.8 NC_005261.1 + 106281 0.66 0.505087
Target:  5'- gGCGG-CCCGUG-CaaaCGCCGUCGaCCu -3'
miRNA:   3'- -CGCCuGGGCGCaGgugGCGGCGGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.