miRNA display CGI


Results 41 - 60 of 761 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23605 3' -64.8 NC_005261.1 + 106026 0.66 0.532528
Target:  5'- -aGGACCgGaGgcacgCCACCG-CGCUGCCc -3'
miRNA:   3'- cgCCUGGgCgCa----GGUGGCgGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 102228 0.66 0.532528
Target:  5'- aCGGcCUCGauggCCGCCGUCGcCCGCUg -3'
miRNA:   3'- cGCCuGGGCgca-GGUGGCGGC-GGCGG- -5'
23605 3' -64.8 NC_005261.1 + 2497 0.66 0.532528
Target:  5'- aGCGGGuggUCCGCGa--GCCG-CGCCGCg -3'
miRNA:   3'- -CGCCU---GGGCGCaggUGGCgGCGGCGg -5'
23605 3' -64.8 NC_005261.1 + 4061 0.66 0.532528
Target:  5'- uGCGcGGCCaugGCGUCC-CCGaCCGgCGgCa -3'
miRNA:   3'- -CGC-CUGGg--CGCAGGuGGC-GGCgGCgG- -5'
23605 3' -64.8 NC_005261.1 + 128855 0.66 0.532528
Target:  5'- aCGGugCCcCG-CC-UCGUCGCUGCCg -3'
miRNA:   3'- cGCCugGGcGCaGGuGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 112544 0.66 0.532528
Target:  5'- cCGGACCUGCucuUCgACCGCUaccUCGCCu -3'
miRNA:   3'- cGCCUGGGCGc--AGgUGGCGGc--GGCGG- -5'
23605 3' -64.8 NC_005261.1 + 97066 0.66 0.532528
Target:  5'- gGCGGGCacgauCCGCGUCggaGgCGCCgGCUggGCCg -3'
miRNA:   3'- -CGCCUG-----GGCGCAGg--UgGCGG-CGG--CGG- -5'
23605 3' -64.8 NC_005261.1 + 88835 0.66 0.532528
Target:  5'- cGCGccGGCCCgGCGUCgGCUaccuggGCCG-CGCCu -3'
miRNA:   3'- -CGC--CUGGG-CGCAGgUGG------CGGCgGCGG- -5'
23605 3' -64.8 NC_005261.1 + 29972 0.66 0.532528
Target:  5'- gGCGG-CgCG-GUgCGCCGCCGgCGCg -3'
miRNA:   3'- -CGCCuGgGCgCAgGUGGCGGCgGCGg -5'
23605 3' -64.8 NC_005261.1 + 54073 0.66 0.532528
Target:  5'- uGCGGucgaagGCCgCGCGgaccgCCACguUGCCgaugGCCGCCc -3'
miRNA:   3'- -CGCC------UGG-GCGCa----GGUG--GCGG----CGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 51775 0.66 0.523318
Target:  5'- cGCuGGCCgGCGUcgcCCugCugGCCGUgGCCa -3'
miRNA:   3'- -CGcCUGGgCGCA---GGugG--CGGCGgCGG- -5'
23605 3' -64.8 NC_005261.1 + 55054 0.66 0.523318
Target:  5'- cGCgGGGCCgGCGagcUCgGCCGCCGaaGgCa -3'
miRNA:   3'- -CG-CCUGGgCGC---AGgUGGCGGCggCgG- -5'
23605 3' -64.8 NC_005261.1 + 55088 0.66 0.523318
Target:  5'- cGCaGACUCGCGUCCgcgacaaagACCgggcacccggGCCGCUcaacuGCCg -3'
miRNA:   3'- -CGcCUGGGCGCAGG---------UGG----------CGGCGG-----CGG- -5'
23605 3' -64.8 NC_005261.1 + 56594 0.66 0.523318
Target:  5'- cGCGGAcccCCCGCGcgCCAagCGCgCGCgCGUg -3'
miRNA:   3'- -CGCCU---GGGCGCa-GGUg-GCG-GCG-GCGg -5'
23605 3' -64.8 NC_005261.1 + 58225 0.66 0.523318
Target:  5'- aGCGcGCCCGCGgcggcgggguccUCgGCCauGCCGCgccgCGCCg -3'
miRNA:   3'- -CGCcUGGGCGC------------AGgUGG--CGGCG----GCGG- -5'
23605 3' -64.8 NC_005261.1 + 74806 0.66 0.523318
Target:  5'- uCGaGGCCCGCGUggcggaggUgGCCGCCGUgcuCGCg -3'
miRNA:   3'- cGC-CUGGGCGCA--------GgUGGCGGCG---GCGg -5'
23605 3' -64.8 NC_005261.1 + 84574 0.66 0.523318
Target:  5'- aCGGcCCCGUagacggccGUCUgcgccagcgcGCCGuuGCUGCCg -3'
miRNA:   3'- cGCCuGGGCG--------CAGG----------UGGCggCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 129807 0.66 0.523318
Target:  5'- cGCGcucgcGCCCGCGcCCugCGCCcggaUGCCc -3'
miRNA:   3'- -CGCc----UGGGCGCaGGugGCGGcg--GCGG- -5'
23605 3' -64.8 NC_005261.1 + 50103 0.66 0.523318
Target:  5'- cGCuG-CCCGCG-CCG-CGCaggGCCGCCa -3'
miRNA:   3'- -CGcCuGGGCGCaGGUgGCGg--CGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 40245 0.66 0.523318
Target:  5'- cGgGGGCCgugaGCG-CCAUgGCgGCgGCCg -3'
miRNA:   3'- -CgCCUGGg---CGCaGGUGgCGgCGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.