miRNA display CGI

Results 21 - 40 of 761 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23605	3'	-64.8	NC_005261.1	+	62401	0.66	0.550181
	Target:  5'- cGUGGGgaagagcagcUCCGCGcCCGCCgaggccagcgcgaGCCGgUCGCCg -3' miRNA:   3'- -CGCCU----------GGGCGCaGGUGG-------------CGGC-GGCGG- -5'
23605	3'	-64.8	NC_005261.1	+	118298	0.66	0.550181
	Target:  5'- cGCGGGCaCCGgGgcgcacuUCCGCaccgCGCUGCUgGCCa -3' miRNA:   3'- -CGCCUG-GGCgC-------AGGUG----GCGGCGG-CGG- -5'
23605	3'	-64.8	NC_005261.1	+	85560	0.66	0.548314
	Target:  5'- uGCGGcgccgcgagguucgGCgCCGCGaCCGCgGCCuCCGCg -3' miRNA:   3'- -CGCC--------------UG-GGCGCaGGUGgCGGcGGCGg -5'
23605	3'	-64.8	NC_005261.1	+	47119	0.66	0.541795
	Target:  5'- -aGGACgugCGCGUCCAggUCGUCGCgcacagCGCCg -3' miRNA:   3'- cgCCUGg--GCGCAGGU--GGCGGCG------GCGG- -5'
23605	3'	-64.8	NC_005261.1	+	93647	0.66	0.541795
	Target:  5'- cGCGaGGUCCGCGUacgcCCACCGguCCGCgggcggcggCGCCg -3' miRNA:   3'- -CGC-CUGGGCGCA----GGUGGC--GGCG---------GCGG- -5'
23605	3'	-64.8	NC_005261.1	+	104359	0.66	0.541795
	Target:  5'- aGCGccGCCCGCGagaACaGCCGCCgGCCg -3' miRNA:   3'- -CGCc-UGGGCGCaggUGgCGGCGG-CGG- -5'
23605	3'	-64.8	NC_005261.1	+	104520	0.66	0.541795
	Target:  5'- gGCGG--CCGCGaCgGCgGCCGCCaCCa -3' miRNA:   3'- -CGCCugGGCGCaGgUGgCGGCGGcGG- -5'
23605	3'	-64.8	NC_005261.1	+	4951	0.66	0.541795
	Target:  5'- cGCGG-CCCagGCGcCC-CCgGCCGCgGCg -3' miRNA:   3'- -CGCCuGGG--CGCaGGuGG-CGGCGgCGg -5'
23605	3'	-64.8	NC_005261.1	+	21881	0.66	0.541795
	Target:  5'- cGCGcGCCCGCGgg-GCCcCCGCCcCCa -3' miRNA:   3'- -CGCcUGGGCGCaggUGGcGGCGGcGG- -5'
23605	3'	-64.8	NC_005261.1	+	44027	0.66	0.541795
	Target:  5'- gGCGGGCggccgCCGCG-CgGCgGCCGCgGgCg -3' miRNA:   3'- -CGCCUG-----GGCGCaGgUGgCGGCGgCgG- -5'
23605	3'	-64.8	NC_005261.1	+	110131	0.66	0.541795
	Target:  5'- cGCuGACgcaccccgCCGaCGUCaucggCAUgGCCGCCGCCa -3' miRNA:   3'- -CGcCUG--------GGC-GCAG-----GUGgCGGCGGCGG- -5'
23605	3'	-64.8	NC_005261.1	+	125769	0.66	0.541795
	Target:  5'- cGCGGGCUCgGCuaaggCCAagGCCGCUGCg -3' miRNA:   3'- -CGCCUGGG-CGca---GGUggCGGCGGCGg -5'
23605	3'	-64.8	NC_005261.1	+	81294	0.66	0.539009
	Target:  5'- aGCGcGGCgCGCacGUCCGugccguugucggggUCGUCGCCGUCg -3' miRNA:   3'- -CGC-CUGgGCG--CAGGU--------------GGCGGCGGCGG- -5'
23605	3'	-64.8	NC_005261.1	+	48059	0.66	0.539009
	Target:  5'- -gGGGCCCGCGgcCCA-CGCCGaguacagcgagaccCCGCa -3' miRNA:   3'- cgCCUGGGCGCa-GGUgGCGGC--------------GGCGg -5'
23605	3'	-64.8	NC_005261.1	+	28717	0.66	0.537155
	Target:  5'- gGgGGGCCCGgGggccucggcgcccUCCGaggccccagaggaCGCCGCgGCCg -3' miRNA:   3'- -CgCCUGGGCgC-------------AGGUg------------GCGGCGgCGG- -5'
23605	3'	-64.8	NC_005261.1	+	54073	0.66	0.532528
	Target:  5'- uGCGGucgaagGCCgCGCGgaccgCCACguUGCCgaugGCCGCCc -3' miRNA:   3'- -CGCC------UGG-GCGCa----GGUG--GCGG----CGGCGG- -5'
23605	3'	-64.8	NC_005261.1	+	112544	0.66	0.532528
	Target:  5'- cCGGACCUGCucuUCgACCGCUaccUCGCCu -3' miRNA:   3'- cGCCUGGGCGc--AGgUGGCGGc--GGCGG- -5'
23605	3'	-64.8	NC_005261.1	+	97066	0.66	0.532528
	Target:  5'- gGCGGGCacgauCCGCGUCggaGgCGCCgGCUggGCCg -3' miRNA:   3'- -CGCCUG-----GGCGCAGg--UgGCGG-CGG--CGG- -5'
23605	3'	-64.8	NC_005261.1	+	88835	0.66	0.532528
	Target:  5'- cGCGccGGCCCgGCGUCgGCUaccuggGCCG-CGCCu -3' miRNA:   3'- -CGC--CUGGG-CGCAGgUGG------CGGCgGCGG- -5'
23605	3'	-64.8	NC_005261.1	+	29972	0.66	0.532528
	Target:  5'- gGCGG-CgCG-GUgCGCCGCCGgCGCg -3' miRNA:   3'- -CGCCuGgGCgCAgGUGGCGGCgGCGg -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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