miRNA display CGI


Results 21 - 40 of 761 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23605 3' -64.8 NC_005261.1 + 39313 0.83 0.044874
Target:  5'- cGCGGuucCUCGCGUCCaaccgcGCCGCCGCgGCCa -3'
miRNA:   3'- -CGCCu--GGGCGCAGG------UGGCGGCGgCGG- -5'
23605 3' -64.8 NC_005261.1 + 71435 0.83 0.044874
Target:  5'- cCGGGCCCGCGgCgCGCaGCCGCCGCCu -3'
miRNA:   3'- cGCCUGGGCGCaG-GUGgCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 108337 0.83 0.046029
Target:  5'- cCGcGACCCGCG-CCaggGCCGCCGCCGUCg -3'
miRNA:   3'- cGC-CUGGGCGCaGG---UGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 3907 0.82 0.047212
Target:  5'- cGCGGgcGCCCGCG-CCGCCGgCGCCgGCCu -3'
miRNA:   3'- -CGCC--UGGGCGCaGGUGGCgGCGG-CGG- -5'
23605 3' -64.8 NC_005261.1 + 55965 0.82 0.047212
Target:  5'- cCGGGucuCCCGCGagCGCCGCCGUCGCCa -3'
miRNA:   3'- cGCCU---GGGCGCagGUGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 83081 0.82 0.050556
Target:  5'- gGCGGccggcgcuuccagcGCCUccaGCG-CCGCCGCCGCCGCCg -3'
miRNA:   3'- -CGCC--------------UGGG---CGCaGGUGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 81506 0.82 0.052247
Target:  5'- cGCGGcGCgCGCG-CCGCCGCCGgCGCCa -3'
miRNA:   3'- -CGCC-UGgGCGCaGGUGGCGGCgGCGG- -5'
23605 3' -64.8 NC_005261.1 + 33963 0.82 0.053585
Target:  5'- cGCuGGACCUucugCCGCCGCCGCCGCCg -3'
miRNA:   3'- -CG-CCUGGGcgcaGGUGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 111624 0.81 0.054957
Target:  5'- uGCGG-CgCCGUG-CCGCCGCCGCcCGCCg -3'
miRNA:   3'- -CGCCuG-GGCGCaGGUGGCGGCG-GCGG- -5'
23605 3' -64.8 NC_005261.1 + 126512 0.81 0.057803
Target:  5'- gGCGGucugccugggcGCCCGCGcCCGCCGCgccucggccacgCGCCGCCg -3'
miRNA:   3'- -CGCC-----------UGGGCGCaGGUGGCG------------GCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 91454 0.81 0.061717
Target:  5'- cGCGGcacggccccGCCCGCGccucccagcggcgCCGCCGCgGCCGCCg -3'
miRNA:   3'- -CGCC---------UGGGCGCa------------GGUGGCGgCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 32650 0.81 0.062341
Target:  5'- aGCGGGgccagcccCCCGCG-CCGCuaaCGCCGCCGCCc -3'
miRNA:   3'- -CGCCU--------GGGCGCaGGUG---GCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 106335 0.81 0.063929
Target:  5'- aCGGcCCCgccgccGCGUCCGCCcCCGCCGCCg -3'
miRNA:   3'- cGCCuGGG------CGCAGGUGGcGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 92184 0.81 0.063929
Target:  5'- cCGGGCCCGaCG-CCGCCGCUggcgcaGCCGCCg -3'
miRNA:   3'- cGCCUGGGC-GCaGGUGGCGG------CGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 93926 0.81 0.063929
Target:  5'- cGCGGGCuuGCGccgUCCGCgGgCGCCGCCu -3'
miRNA:   3'- -CGCCUGggCGC---AGGUGgCgGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 3430 0.8 0.065064
Target:  5'- cGCGGGCCaGCGUCCaggcgggcgcgcggGCCGCCG-CGCCg -3'
miRNA:   3'- -CGCCUGGgCGCAGG--------------UGGCGGCgGCGG- -5'
23605 3' -64.8 NC_005261.1 + 99854 0.8 0.065556
Target:  5'- aGCGGcACCgGcCG-CCGCgCGCCGCCGCCg -3'
miRNA:   3'- -CGCC-UGGgC-GCaGGUG-GCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 59334 0.8 0.065556
Target:  5'- uGCGcGCCCGCcgggUCGCCGCCGUCGCCa -3'
miRNA:   3'- -CGCcUGGGCGca--GGUGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 100075 0.8 0.067223
Target:  5'- cGgGGGCgcgCCGCGccccucgCCGCCGCCGCUGCCg -3'
miRNA:   3'- -CgCCUG---GGCGCa------GGUGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 1211 0.8 0.067223
Target:  5'- cGCGGACCCccCG-CCgauGCCGCCGUCGCCg -3'
miRNA:   3'- -CGCCUGGGc-GCaGG---UGGCGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.