miRNA display CGI


Results 1 - 20 of 761 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23605 3' -64.8 NC_005261.1 + 86913 1.13 0.000296
Target:  5'- cGCGGACCCGCGUCCACCGCCGCCGCCg -3'
miRNA:   3'- -CGCCUGGGCGCAGGUGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 104440 0.92 0.009122
Target:  5'- aGCGGGCCCGCGU-CGCCGCCGCCGgCg -3'
miRNA:   3'- -CGCCUGGGCGCAgGUGGCGGCGGCgG- -5'
23605 3' -64.8 NC_005261.1 + 95725 0.88 0.019334
Target:  5'- uCGGGCCCGCcgcgcucagcggcgCCGCCGCCGCCGCCg -3'
miRNA:   3'- cGCCUGGGCGca------------GGUGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 111286 0.87 0.021374
Target:  5'- cCGG-CCCGCGccuUCCGCCGCCGCUGCCu -3'
miRNA:   3'- cGCCuGGGCGC---AGGUGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 32298 0.87 0.023088
Target:  5'- gGCGGGCgCCGCccCCGCCGCCGCCGCg -3'
miRNA:   3'- -CGCCUG-GGCGcaGGUGGCGGCGGCGg -5'
23605 3' -64.8 NC_005261.1 + 102964 0.86 0.026249
Target:  5'- cGCGGGCgCCGCGggcUCCGCCGCCGCgCGCg -3'
miRNA:   3'- -CGCCUG-GGCGC---AGGUGGCGGCG-GCGg -5'
23605 3' -64.8 NC_005261.1 + 93797 0.86 0.026931
Target:  5'- -gGGACgCCGCG-CCGCCGCgCGCCGCCg -3'
miRNA:   3'- cgCCUG-GGCGCaGGUGGCG-GCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 102671 0.86 0.026931
Target:  5'- cGCGGcgcccaGCgCCGCGUCCGCCGCgGCCGUCg -3'
miRNA:   3'- -CGCC------UG-GGCGCAGGUGGCGgCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 98747 0.85 0.029083
Target:  5'- cGCGGGCguuggCCGCGcgguugCCGCUGCCGCCGCCg -3'
miRNA:   3'- -CGCCUG-----GGCGCa-----GGUGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 33309 0.85 0.033052
Target:  5'- cGCGGGaccaggaCCGCuG-CCGCCGCCGCCGCCg -3'
miRNA:   3'- -CGCCUg------GGCG-CaGGUGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 46953 0.85 0.033052
Target:  5'- cGCGGGCcaguCCGCGccgucgCCGCUGCCGCCGCCc -3'
miRNA:   3'- -CGCCUG----GGCGCa-----GGUGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 22804 0.84 0.034784
Target:  5'- cGCGG-CCgGCGgcggcgCUGCCGCCGCCGCCg -3'
miRNA:   3'- -CGCCuGGgCGCa-----GGUGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 82448 0.84 0.035684
Target:  5'- cCGGcCCCGCG-CCGCCGuuGCCGCCc -3'
miRNA:   3'- cGCCuGGGCGCaGGUGGCggCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 10236 0.84 0.037552
Target:  5'- gGCGGGCCCGCG--CACuCGCCGCCGCg -3'
miRNA:   3'- -CGCCUGGGCGCagGUG-GCGGCGGCGg -5'
23605 3' -64.8 NC_005261.1 + 55361 0.84 0.038423
Target:  5'- aGCGGcaggcccagccugGCCCGcCG-CCGCUGCCGCCGCCg -3'
miRNA:   3'- -CGCC-------------UGGGC-GCaGGUGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 106237 0.84 0.038521
Target:  5'- cGCGGcCgCCGCGcCCuaccggGCCGCCGCCGCCg -3'
miRNA:   3'- -CGCCuG-GGCGCaGG------UGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 107891 0.83 0.041579
Target:  5'- cGCGG-CCCGCuuGUCCGCgGCCGCgGCCu -3'
miRNA:   3'- -CGCCuGGGCG--CAGGUGgCGGCGgCGG- -5'
23605 3' -64.8 NC_005261.1 + 117720 0.83 0.042542
Target:  5'- cGCGGGCCCGCaagcggCCGCgcgcuggCGCCGCCGCCc -3'
miRNA:   3'- -CGCCUGGGCGca----GGUG-------GCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 64684 0.83 0.043749
Target:  5'- uGCGGcACCgggCGCGUCCcgggGCCGCCGCCGCg -3'
miRNA:   3'- -CGCC-UGG---GCGCAGG----UGGCGGCGGCGg -5'
23605 3' -64.8 NC_005261.1 + 58498 0.83 0.044196
Target:  5'- cGCGGccgcuuuuggcGCCCGCGUCCAggaggcggaucgagcCCaGCCGCCGCCc -3'
miRNA:   3'- -CGCC-----------UGGGCGCAGGU---------------GG-CGGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.