miRNA display CGI


Results 1 - 20 of 761 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23605 3' -64.8 NC_005261.1 + 105 0.73 0.220179
Target:  5'- cCGGGcCCCGcCGcCCgcGCCGgCGCCGCCc -3'
miRNA:   3'- cGCCU-GGGC-GCaGG--UGGCgGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 198 0.77 0.110443
Target:  5'- -gGGGCCaGCGgugCCGCCGCCGCC-CCu -3'
miRNA:   3'- cgCCUGGgCGCa--GGUGGCGGCGGcGG- -5'
23605 3' -64.8 NC_005261.1 + 244 0.67 0.452179
Target:  5'- aGCGGGCCCggcuGCGgCgGCgGCUGCgGCg -3'
miRNA:   3'- -CGCCUGGG----CGCaGgUGgCGGCGgCGg -5'
23605 3' -64.8 NC_005261.1 + 642 0.7 0.314042
Target:  5'- gGCGGccgccaGCgCCGCGUCC-CCGgCGCCGa- -3'
miRNA:   3'- -CGCC------UG-GGCGCAGGuGGCgGCGGCgg -5'
23605 3' -64.8 NC_005261.1 + 796 0.66 0.51417
Target:  5'- ----cCCCGCG-CCGCCGCCccccacGCgCGCCc -3'
miRNA:   3'- cgccuGGGCGCaGGUGGCGG------CG-GCGG- -5'
23605 3' -64.8 NC_005261.1 + 1169 0.72 0.225269
Target:  5'- cGCGccGGCCCGCG-CCGCgGCCGggGCCg -3'
miRNA:   3'- -CGC--CUGGGCGCaGGUGgCGGCggCGG- -5'
23605 3' -64.8 NC_005261.1 + 1211 0.8 0.067223
Target:  5'- cGCGGACCCccCG-CCgauGCCGCCGUCGCCg -3'
miRNA:   3'- -CGCCUGGGc-GCaGG---UGGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 1316 0.71 0.281796
Target:  5'- gGCGGcACgCGC-UCCGggaCGCCGCCGCg -3'
miRNA:   3'- -CGCC-UGgGCGcAGGUg--GCGGCGGCGg -5'
23605 3' -64.8 NC_005261.1 + 1367 0.79 0.082928
Target:  5'- cGCGGGCCCugguccGCGUCCcaggccacgccgggcGCCGCgGCCGCg -3'
miRNA:   3'- -CGCCUGGG------CGCAGG---------------UGGCGgCGGCGg -5'
23605 3' -64.8 NC_005261.1 + 1426 0.66 0.523318
Target:  5'- gGCGGcGCCCGCcUCCagcACCaGCgGCggCGCCu -3'
miRNA:   3'- -CGCC-UGGGCGcAGG---UGG-CGgCG--GCGG- -5'
23605 3' -64.8 NC_005261.1 + 1478 0.79 0.080086
Target:  5'- aGCGcGGCCgCGCagaaggCCACCGCCGCgGCCg -3'
miRNA:   3'- -CGC-CUGG-GCGca----GGUGGCGGCGgCGG- -5'
23605 3' -64.8 NC_005261.1 + 1520 0.71 0.275671
Target:  5'- uCGGGCgCCaGC-UCCAgCGCgCGCCGCCc -3'
miRNA:   3'- cGCCUG-GG-CGcAGGUgGCG-GCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 1745 0.75 0.161387
Target:  5'- cGCGGGCCCaggcGCGUggCCACCGUguagcgcacguuggCGCCGCg -3'
miRNA:   3'- -CGCCUGGG----CGCA--GGUGGCG--------------GCGGCGg -5'
23605 3' -64.8 NC_005261.1 + 1877 0.68 0.393708
Target:  5'- cGCGaGGCCagcacggCGCGcgCCAgCGCgCGCCGCUc -3'
miRNA:   3'- -CGC-CUGG-------GCGCa-GGUgGCG-GCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 2007 0.72 0.252232
Target:  5'- cGCGGGguCCacgGCGUCgaucacgaucaGCCGCCGCCGCg -3'
miRNA:   3'- -CGCCU--GGg--CGCAGg----------UGGCGGCGGCGg -5'
23605 3' -64.8 NC_005261.1 + 2084 0.69 0.362998
Target:  5'- cGCGGAaggccagguCCCGCGUCgcgagcagcagcaCGCC-CUGCgCGCCg -3'
miRNA:   3'- -CGCCU---------GGGCGCAG-------------GUGGcGGCG-GCGG- -5'
23605 3' -64.8 NC_005261.1 + 2240 0.7 0.320817
Target:  5'- cGCGcACCgGCGgCCACUcagGCCGCCGgCg -3'
miRNA:   3'- -CGCcUGGgCGCaGGUGG---CGGCGGCgG- -5'
23605 3' -64.8 NC_005261.1 + 2351 0.71 0.288029
Target:  5'- cCGcGAUCUGCGacauccaggCCACgCGCCGCCGCa -3'
miRNA:   3'- cGC-CUGGGCGCa--------GGUG-GCGGCGGCGg -5'
23605 3' -64.8 NC_005261.1 + 2412 0.68 0.394497
Target:  5'- cGCGGGcCCCGCG-CgGCgGCgGgCCGCg -3'
miRNA:   3'- -CGCCU-GGGCGCaGgUGgCGgC-GGCGg -5'
23605 3' -64.8 NC_005261.1 + 2497 0.66 0.532528
Target:  5'- aGCGGGuggUCCGCGa--GCCG-CGCCGCg -3'
miRNA:   3'- -CGCCU---GGGCGCaggUGGCgGCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.