miRNA display CGI


Results 1 - 20 of 761 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23605 3' -64.8 NC_005261.1 + 137927 0.67 0.452179
Target:  5'- aGCGGGCCCggcuGCGgCgGCgGCUGCgGCg -3'
miRNA:   3'- -CGCCUGGG----CGCaGgUGgCGGCGgCGg -5'
23605 3' -64.8 NC_005261.1 + 137881 0.77 0.110443
Target:  5'- -gGGGCCaGCGgugCCGCCGCCGCC-CCu -3'
miRNA:   3'- cgCCUGGgCGCa--GGUGGCGGCGGcGG- -5'
23605 3' -64.8 NC_005261.1 + 137788 0.73 0.220179
Target:  5'- cCGGGcCCCGcCGcCCgcGCCGgCGCCGCCc -3'
miRNA:   3'- cGCCU-GGGC-GCaGG--UGGCgGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 135576 0.72 0.230459
Target:  5'- -aGGACCCcaucGUGgCCACgGCCGgCGCCg -3'
miRNA:   3'- cgCCUGGG----CGCaGGUGgCGGCgGCGG- -5'
23605 3' -64.8 NC_005261.1 + 135302 0.67 0.487136
Target:  5'- cGCGcGACCgGCGUgUCGCCcuggGCgGCCGUg -3'
miRNA:   3'- -CGC-CUGGgCGCA-GGUGG----CGgCGGCGg -5'
23605 3' -64.8 NC_005261.1 + 135115 0.75 0.158344
Target:  5'- gGCGGAcCCCGCGUCUccgcagcGCgGCgggggagacgaCGCCGCCu -3'
miRNA:   3'- -CGCCU-GGGCGCAGG-------UGgCG-----------GCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 135015 0.75 0.144241
Target:  5'- gGCGGGCCCGCa--CGCgGCCGCgGCg -3'
miRNA:   3'- -CGCCUGGGCGcagGUGgCGGCGgCGg -5'
23605 3' -64.8 NC_005261.1 + 134686 0.67 0.496075
Target:  5'- -aGGACCCGaCGaCUgcgacugcgACCGCgGCgCGCCc -3'
miRNA:   3'- cgCCUGGGC-GCaGG---------UGGCGgCG-GCGG- -5'
23605 3' -64.8 NC_005261.1 + 134351 0.68 0.394497
Target:  5'- aGCc--CCCGCG-CCGCCGCgcggggggcggCGCCGCUg -3'
miRNA:   3'- -CGccuGGGCGCaGGUGGCG-----------GCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 134289 0.74 0.191666
Target:  5'- cUGGGCgUGgGUCCA-CGUCGCCGCCu -3'
miRNA:   3'- cGCCUGgGCgCAGGUgGCGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 134239 0.71 0.294369
Target:  5'- gGCGuGGCgCaCGCGcCCugCGCgGCCGCg -3'
miRNA:   3'- -CGC-CUG-G-GCGCaGGugGCGgCGGCGg -5'
23605 3' -64.8 NC_005261.1 + 134102 0.7 0.300818
Target:  5'- cGCGccGGCgCGCGcUCGCCGCCGacuuCCGCCu -3'
miRNA:   3'- -CGC--CUGgGCGCaGGUGGCGGC----GGCGG- -5'
23605 3' -64.8 NC_005261.1 + 134005 0.69 0.371275
Target:  5'- gGCGGcuacACCCucaacuaCGCCGCCGCCGCg -3'
miRNA:   3'- -CGCC----UGGGcgcag--GUGGCGGCGGCGg -5'
23605 3' -64.8 NC_005261.1 + 133834 0.69 0.386653
Target:  5'- cGCGG--CCGCGUgCG-CGCCGUgGCCg -3'
miRNA:   3'- -CGCCugGGCGCAgGUgGCGGCGgCGG- -5'
23605 3' -64.8 NC_005261.1 + 133629 0.71 0.288029
Target:  5'- uGUGGG-CCGCGcUCGCCG-CGCCGCUg -3'
miRNA:   3'- -CGCCUgGGCGCaGGUGGCgGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 133280 0.7 0.334693
Target:  5'- -aGGGCgCCgGCGcCCGCCucGUgGCCGCCa -3'
miRNA:   3'- cgCCUG-GG-CGCaGGUGG--CGgCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 133186 0.68 0.394497
Target:  5'- cGCGG-CgCCGUcgaggaGUUCAUCGCCGaCGCCg -3'
miRNA:   3'- -CGCCuG-GGCG------CAGGUGGCGGCgGCGG- -5'
23605 3' -64.8 NC_005261.1 + 133145 0.75 0.162542
Target:  5'- uGCGGugCgCGCucgCCGCCGUcggcguCGCCGCCg -3'
miRNA:   3'- -CGCCugG-GCGca-GGUGGCG------GCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 133020 0.67 0.478273
Target:  5'- uGCGccACCCGCGggcgcgCCACCGC-GCaCGCa -3'
miRNA:   3'- -CGCc-UGGGCGCa-----GGUGGCGgCG-GCGg -5'
23605 3' -64.8 NC_005261.1 + 132587 0.7 0.314042
Target:  5'- gGCGcGCCCGCGgacgCC-CgGCCcggcgaGCCGCCa -3'
miRNA:   3'- -CGCcUGGGCGCa---GGuGgCGG------CGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.