miRNA display CGI


Results 21 - 40 of 761 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23605 3' -64.8 NC_005261.1 + 2587 0.7 0.300818
Target:  5'- gGCGGcACgCgGCGgaagCCGCCGUCggcggcgggGCCGCCg -3'
miRNA:   3'- -CGCC-UG-GgCGCa---GGUGGCGG---------CGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 2679 0.68 0.435222
Target:  5'- uGgGGACCCgGCGgCgCGCCggcuuuugGCCGgCGCCg -3'
miRNA:   3'- -CgCCUGGG-CGCaG-GUGG--------CGGCgGCGG- -5'
23605 3' -64.8 NC_005261.1 + 2730 0.68 0.426882
Target:  5'- gGCcGACuuGCG-CUugCGCCGCgGCg -3'
miRNA:   3'- -CGcCUGggCGCaGGugGCGGCGgCGg -5'
23605 3' -64.8 NC_005261.1 + 2765 0.74 0.187241
Target:  5'- gGCGGGCCuCGagGcCCGCCcccgagggGCUGCCGCCg -3'
miRNA:   3'- -CGCCUGG-GCg-CaGGUGG--------CGGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 2924 0.77 0.110443
Target:  5'- cCGGcCCCaGCaccUCCACCGCCGCgGCCg -3'
miRNA:   3'- cGCCuGGG-CGc--AGGUGGCGGCGgCGG- -5'
23605 3' -64.8 NC_005261.1 + 3022 0.7 0.341794
Target:  5'- cGCGGGCCUcccCGUCC-CCGUCcCCGUCc -3'
miRNA:   3'- -CGCCUGGGc--GCAGGuGGCGGcGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 3306 0.66 0.504183
Target:  5'- cGCGGugccccgGCCCGCauguccUCCACCuccacccgcGCCGCggCGCCc -3'
miRNA:   3'- -CGCC-------UGGGCGc-----AGGUGG---------CGGCG--GCGG- -5'
23605 3' -64.8 NC_005261.1 + 3372 0.7 0.300818
Target:  5'- -aGGG-CCGCGagCGCgGCCGCCaGCCg -3'
miRNA:   3'- cgCCUgGGCGCagGUGgCGGCGG-CGG- -5'
23605 3' -64.8 NC_005261.1 + 3430 0.8 0.065064
Target:  5'- cGCGGGCCaGCGUCCaggcgggcgcgcggGCCGCCG-CGCCg -3'
miRNA:   3'- -CGCCUGGgCGCAGG--------------UGGCGGCgGCGG- -5'
23605 3' -64.8 NC_005261.1 + 3489 0.71 0.281796
Target:  5'- aGCgGGGCCacgguuCGCGccgCCAgCGCgGCCGCCu -3'
miRNA:   3'- -CG-CCUGG------GCGCa--GGUgGCGgCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 3563 0.67 0.452179
Target:  5'- cGCGGcgccgcuaaggcGCgCGCGcUCCACCGCgucgcggGCCGCg -3'
miRNA:   3'- -CGCC------------UGgGCGC-AGGUGGCGg------CGGCGg -5'
23605 3' -64.8 NC_005261.1 + 3735 0.69 0.386653
Target:  5'- cCGGACgCGcCGgcggCgCACCG-CGCCGCCu -3'
miRNA:   3'- cGCCUGgGC-GCa---G-GUGGCgGCGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 3830 0.73 0.208844
Target:  5'- cGCGGGCCCgggcgcuggcggcaGCGg-CGCCGgCGCCGCg -3'
miRNA:   3'- -CGCCUGGG--------------CGCagGUGGCgGCGGCGg -5'
23605 3' -64.8 NC_005261.1 + 3907 0.82 0.047212
Target:  5'- cGCGGgcGCCCGCG-CCGCCGgCGCCgGCCu -3'
miRNA:   3'- -CGCC--UGGGCGCaGGUGGCgGCGG-CGG- -5'
23605 3' -64.8 NC_005261.1 + 4061 0.66 0.532528
Target:  5'- uGCGcGGCCaugGCGUCC-CCGaCCGgCGgCa -3'
miRNA:   3'- -CGC-CUGGg--CGCAGGuGGC-GGCgGCgG- -5'
23605 3' -64.8 NC_005261.1 + 4297 0.8 0.072472
Target:  5'- cGCGGGcCCCGCGgCCGCCGCguagcgcgcgGCCGCCu -3'
miRNA:   3'- -CGCCU-GGGCGCaGGUGGCGg---------CGGCGG- -5'
23605 3' -64.8 NC_005261.1 + 4365 0.7 0.314042
Target:  5'- cGCGaGugucGCCCGCG-CCGCCGaagcgcaCGCgGCCg -3'
miRNA:   3'- -CGC-C----UGGGCGCaGGUGGCg------GCGgCGG- -5'
23605 3' -64.8 NC_005261.1 + 4451 0.68 0.394497
Target:  5'- aGCGGGCCCuccagcggcgGCGgcccgUCGCgCGgCGCCGCg -3'
miRNA:   3'- -CGCCUGGG----------CGCa----GGUG-GCgGCGGCGg -5'
23605 3' -64.8 NC_005261.1 + 4503 0.71 0.269056
Target:  5'- cGCGGGCCCcagucgcGCGcCCGCgcgggCGCCGCgGCg -3'
miRNA:   3'- -CGCCUGGG-------CGCaGGUG-----GCGGCGgCGg -5'
23605 3' -64.8 NC_005261.1 + 4576 0.66 0.551116
Target:  5'- gGCGGGuCCgGCGgggcgCC-CC-CCGgCGCCa -3'
miRNA:   3'- -CGCCU-GGgCGCa----GGuGGcGGCgGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.