miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23605 5' -51 NC_005261.1 + 86951 1.07 0.00978
Target:  5'- gCUGGUCAAAGACCGUGAAGCACACGUc -3'
miRNA:   3'- -GACCAGUUUCUGGCACUUCGUGUGCA- -5'
23605 5' -51 NC_005261.1 + 100860 0.76 0.6297
Target:  5'- -cGcGUCGAAGGCCGccaGAAGCGCGCGc -3'
miRNA:   3'- gaC-CAGUUUCUGGCa--CUUCGUGUGCa -5'
23605 5' -51 NC_005261.1 + 104383 0.73 0.812742
Target:  5'- -cGGcCGGAGGCCGaGAGGCGCGCc- -3'
miRNA:   3'- gaCCaGUUUCUGGCaCUUCGUGUGca -5'
23605 5' -51 NC_005261.1 + 112841 0.72 0.839219
Target:  5'- uCUGcaCGGAGAUCGUGcAGCGCGCGg -3'
miRNA:   3'- -GACcaGUUUCUGGCACuUCGUGUGCa -5'
23605 5' -51 NC_005261.1 + 68080 0.71 0.860684
Target:  5'- -cGGUCGcccgcgggggcgggGAGGCCGUGAAGUucgggcuggagcuGCGCGg -3'
miRNA:   3'- gaCCAGU--------------UUCUGGCACUUCG-------------UGUGCa -5'
23605 5' -51 NC_005261.1 + 79472 0.71 0.886447
Target:  5'- -cGGUCcucuAGGACCGUGAGGUuCAgGUc -3'
miRNA:   3'- gaCCAGu---UUCUGGCACUUCGuGUgCA- -5'
23605 5' -51 NC_005261.1 + 115551 0.71 0.893496
Target:  5'- gCUGGUgcAGGuCCGUGuggcAGCACACGa -3'
miRNA:   3'- -GACCAguUUCuGGCACu---UCGUGUGCa -5'
23605 5' -51 NC_005261.1 + 85944 0.7 0.913132
Target:  5'- -cGGcCAGGGcGCCGcgGAAGCugGCGUg -3'
miRNA:   3'- gaCCaGUUUC-UGGCa-CUUCGugUGCA- -5'
23605 5' -51 NC_005261.1 + 98710 0.7 0.924937
Target:  5'- gCUGGggcCGGGGuCCGgccuugGggGCACGCGg -3'
miRNA:   3'- -GACCa--GUUUCuGGCa-----CuuCGUGUGCa -5'
23605 5' -51 NC_005261.1 + 23499 0.69 0.935702
Target:  5'- cCUGGgCAGgcgcGGGCCcugGGAGCACGCGg -3'
miRNA:   3'- -GACCaGUU----UCUGGca-CUUCGUGUGCa -5'
23605 5' -51 NC_005261.1 + 70350 0.69 0.935702
Target:  5'- -gGGcCGGGGACCGgGAGGCgGCGCGc -3'
miRNA:   3'- gaCCaGUUUCUGGCaCUUCG-UGUGCa -5'
23605 5' -51 NC_005261.1 + 56352 0.69 0.940695
Target:  5'- -gGGUUAAAuACCGgcaccggcGAGGCGCACGUc -3'
miRNA:   3'- gaCCAGUUUcUGGCa-------CUUCGUGUGCA- -5'
23605 5' -51 NC_005261.1 + 51749 0.69 0.940695
Target:  5'- -cGGgcugcCGcuGGCCGUGAAGCugGCGc -3'
miRNA:   3'- gaCCa----GUuuCUGGCACUUCGugUGCa -5'
23605 5' -51 NC_005261.1 + 40238 0.69 0.940695
Target:  5'- uCUGGccCGGGGGCCGUG-AGCGCcaugGCGg -3'
miRNA:   3'- -GACCa-GUUUCUGGCACuUCGUG----UGCa -5'
23605 5' -51 NC_005261.1 + 128886 0.69 0.940695
Target:  5'- -aGG-CGGGGGCCGgguggGAGGCGgGCGUc -3'
miRNA:   3'- gaCCaGUUUCUGGCa----CUUCGUgUGCA- -5'
23605 5' -51 NC_005261.1 + 34191 0.69 0.94543
Target:  5'- gUGGg-GAGGGCCG-GAGGCAgACGg -3'
miRNA:   3'- gACCagUUUCUGGCaCUUCGUgUGCa -5'
23605 5' -51 NC_005261.1 + 57802 0.69 0.94991
Target:  5'- -cGGgcgcgCGAAGGCCGUGAAGgCGaaggggucCACGUg -3'
miRNA:   3'- gaCCa----GUUUCUGGCACUUC-GU--------GUGCA- -5'
23605 5' -51 NC_005261.1 + 92794 0.68 0.961856
Target:  5'- -gGGUCGGGGuCCGgucgccGGGCGCGCGg -3'
miRNA:   3'- gaCCAGUUUCuGGCac----UUCGUGUGCa -5'
23605 5' -51 NC_005261.1 + 54075 0.68 0.961856
Target:  5'- -cGGUCGAAGGCCGcgcgGAccGC-CACGUu -3'
miRNA:   3'- gaCCAGUUUCUGGCa---CUu-CGuGUGCA- -5'
23605 5' -51 NC_005261.1 + 114773 0.68 0.971664
Target:  5'- uCUGGcCcugauGAcGGCCGaGAAGCACACGa -3'
miRNA:   3'- -GACCaGu----UU-CUGGCaCUUCGUGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.