Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23605 | 5' | -51 | NC_005261.1 | + | 86951 | 1.07 | 0.00978 |
Target: 5'- gCUGGUCAAAGACCGUGAAGCACACGUc -3' miRNA: 3'- -GACCAGUUUCUGGCACUUCGUGUGCA- -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 80066 | 0.68 | 0.971664 |
Target: 5'- -cGGgcgCGGGGGgCGUGggGgACGCGg -3' miRNA: 3'- gaCCa--GUUUCUgGCACuuCgUGUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 114773 | 0.68 | 0.971664 |
Target: 5'- uCUGGcCcugauGAcGGCCGaGAAGCACACGa -3' miRNA: 3'- -GACCaGu----UU-CUGGCaCUUCGUGUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 92794 | 0.68 | 0.961856 |
Target: 5'- -gGGUCGGGGuCCGgucgccGGGCGCGCGg -3' miRNA: 3'- gaCCAGUUUCuGGCac----UUCGUGUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 54075 | 0.68 | 0.961856 |
Target: 5'- -cGGUCGAAGGCCGcgcgGAccGC-CACGUu -3' miRNA: 3'- gaCCAGUUUCUGGCa---CUu-CGuGUGCA- -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 57802 | 0.69 | 0.94991 |
Target: 5'- -cGGgcgcgCGAAGGCCGUGAAGgCGaaggggucCACGUg -3' miRNA: 3'- gaCCa----GUUUCUGGCACUUC-GU--------GUGCA- -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 34191 | 0.69 | 0.94543 |
Target: 5'- gUGGg-GAGGGCCG-GAGGCAgACGg -3' miRNA: 3'- gACCagUUUCUGGCaCUUCGUgUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 51749 | 0.69 | 0.940695 |
Target: 5'- -cGGgcugcCGcuGGCCGUGAAGCugGCGc -3' miRNA: 3'- gaCCa----GUuuCUGGCACUUCGugUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 56352 | 0.69 | 0.940695 |
Target: 5'- -gGGUUAAAuACCGgcaccggcGAGGCGCACGUc -3' miRNA: 3'- gaCCAGUUUcUGGCa-------CUUCGUGUGCA- -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 136246 | 0.67 | 0.979512 |
Target: 5'- -aGGgcaGAGGGCCGaGAgaaGGCACGCGa -3' miRNA: 3'- gaCCag-UUUCUGGCaCU---UCGUGUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 106023 | 0.67 | 0.981729 |
Target: 5'- ----gCGAGGACCG-GAGGCACGCc- -3' miRNA: 3'- gaccaGUUUCUGGCaCUUCGUGUGca -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 55319 | 0.67 | 0.983761 |
Target: 5'- -gGGUCAGGGgguGCUGUGggGCGgC-CGUc -3' miRNA: 3'- gaCCAGUUUC---UGGCACuuCGU-GuGCA- -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 91411 | 0.66 | 0.990222 |
Target: 5'- -cGG-CGAGGA-CGUGGAGCGCgACGc -3' miRNA: 3'- gaCCaGUUUCUgGCACUUCGUG-UGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 105352 | 0.66 | 0.990222 |
Target: 5'- -cGGcCGugaggcAGGCCGUGAcaggcGGCGCGCGc -3' miRNA: 3'- gaCCaGUu-----UCUGGCACU-----UCGUGUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 66552 | 0.66 | 0.987306 |
Target: 5'- gCUGGUC---GGCCGUGccGCGCuCGa -3' miRNA: 3'- -GACCAGuuuCUGGCACuuCGUGuGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 11998 | 0.66 | 0.987306 |
Target: 5'- -cGGcUCGAAGcaguccuCCGUGAAGCGCuCGc -3' miRNA: 3'- gaCC-AGUUUCu------GGCACUUCGUGuGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 49736 | 0.66 | 0.98665 |
Target: 5'- gUGGUCGaagcuGAGGCCGacggugaUGAccgucguguagaucAGCACGCGg -3' miRNA: 3'- gACCAGU-----UUCUGGC-------ACU--------------UCGUGUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 22971 | 0.66 | 0.985617 |
Target: 5'- -aGGcCGAGGACCGggagGAGGCG-GCGg -3' miRNA: 3'- gaCCaGUUUCUGGCa---CUUCGUgUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 67034 | 0.67 | 0.983761 |
Target: 5'- cCUGGcCGGAGAccagcccgcCCGUGuaggcGGGCGCGCGc -3' miRNA: 3'- -GACCaGUUUCU---------GGCAC-----UUCGUGUGCa -5' |
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23605 | 5' | -51 | NC_005261.1 | + | 94764 | 0.67 | 0.983761 |
Target: 5'- uCUGGuUCGAGGA-CGUGgcGcCGCGCGa -3' miRNA: 3'- -GACC-AGUUUCUgGCACuuC-GUGUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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