miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 3' -61 NC_005261.1 + 86710 1.11 0.000669
Target:  5'- gCCCAGCGCGUCCAGCUUCGCCGCCUCg -3'
miRNA:   3'- -GGGUCGCGCAGGUCGAAGCGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 88568 0.82 0.069895
Target:  5'- gCCGGCgacGCGUCCcGCUUCGCCGCCg- -3'
miRNA:   3'- gGGUCG---CGCAGGuCGAAGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 98289 0.82 0.071743
Target:  5'- gCCCGGCGCGUCCgcggccucgggGGCgggCGCCGCCg- -3'
miRNA:   3'- -GGGUCGCGCAGG-----------UCGaa-GCGGCGGag -5'
23606 3' -61 NC_005261.1 + 83093 0.82 0.079616
Target:  5'- uUCCAGCGCcUCCAGCgcCGCCGCCg- -3'
miRNA:   3'- -GGGUCGCGcAGGUCGaaGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 3510 0.81 0.08831
Target:  5'- gCCAGCGCGgccgccUCCAGCgcggCgGCCGCCUCg -3'
miRNA:   3'- gGGUCGCGC------AGGUCGaa--G-CGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 29988 0.8 0.108473
Target:  5'- gCCGGCGCGUCCGGCagCGgCGCgUCu -3'
miRNA:   3'- gGGUCGCGCAGGUCGaaGCgGCGgAG- -5'
23606 3' -61 NC_005261.1 + 73021 0.79 0.123192
Target:  5'- cCCCAGCGCGUcCCAGCcgUCG-CGCCa- -3'
miRNA:   3'- -GGGUCGCGCA-GGUCGa-AGCgGCGGag -5'
23606 3' -61 NC_005261.1 + 101516 0.79 0.129584
Target:  5'- gCCCGGCGCccucGUCgCGGUcgcgCGCCGCCUCg -3'
miRNA:   3'- -GGGUCGCG----CAG-GUCGaa--GCGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 84643 0.78 0.132893
Target:  5'- aCCAGCGUGUugucCCGGCUggCGCCGCC-Cg -3'
miRNA:   3'- gGGUCGCGCA----GGUCGAa-GCGGCGGaG- -5'
23606 3' -61 NC_005261.1 + 115863 0.78 0.139747
Target:  5'- cCCCgccgaGGCGCGcCCGGCaaucucccUCGCCGCCUCc -3'
miRNA:   3'- -GGG-----UCGCGCaGGUCGa-------AGCGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 134096 0.78 0.143294
Target:  5'- uCUCGGCGCG-CCGGCgcgcgcUCGCCGCCg- -3'
miRNA:   3'- -GGGUCGCGCaGGUCGa-----AGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 131034 0.78 0.143294
Target:  5'- gCCgAGCGCG-CCGGCgaCGCCGCCa- -3'
miRNA:   3'- -GGgUCGCGCaGGUCGaaGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 62633 0.77 0.154434
Target:  5'- gCCAGCGUGUCCGGCgcgaCGCCGUUg- -3'
miRNA:   3'- gGGUCGCGCAGGUCGaa--GCGGCGGag -5'
23606 3' -61 NC_005261.1 + 3734 0.77 0.162292
Target:  5'- gCCGGaCGCG-CCGGCggcgcaccgCGCCGCCUCu -3'
miRNA:   3'- gGGUC-GCGCaGGUCGaa-------GCGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 5120 0.77 0.174752
Target:  5'- gCUCGGCGCGggcggcccgCCGGCgcUCGCgCGCCUCg -3'
miRNA:   3'- -GGGUCGCGCa--------GGUCGa-AGCG-GCGGAG- -5'
23606 3' -61 NC_005261.1 + 46107 0.76 0.179092
Target:  5'- gCCGGgggccguggucCGCGUCCAGCaggUCGCCGCC-Cg -3'
miRNA:   3'- gGGUC-----------GCGCAGGUCGa--AGCGGCGGaG- -5'
23606 3' -61 NC_005261.1 + 103475 0.76 0.186688
Target:  5'- gCCAGgGCGUCCAGCUggcgcaagacgucgUCGgCGCCg- -3'
miRNA:   3'- gGGUCgCGCAGGUCGA--------------AGCgGCGGag -5'
23606 3' -61 NC_005261.1 + 101595 0.76 0.192688
Target:  5'- cUCCGcGCGCG-CCGcCUUUGCCGCCUCu -3'
miRNA:   3'- -GGGU-CGCGCaGGUcGAAGCGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 126454 0.75 0.212217
Target:  5'- gCCAGcCGCG-CCAGCg-CGCuCGCCUCg -3'
miRNA:   3'- gGGUC-GCGCaGGUCGaaGCG-GCGGAG- -5'
23606 3' -61 NC_005261.1 + 75416 0.75 0.217358
Target:  5'- gCCCGGCGCGUgCAGUacgcguucgacUUCGagCGCCUCc -3'
miRNA:   3'- -GGGUCGCGCAgGUCG-----------AAGCg-GCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.