miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 3' -61 NC_005261.1 + 185 0.68 0.563492
Target:  5'- cCCUGGUGCucccggggCCAGCggUGCCGCCg- -3'
miRNA:   3'- -GGGUCGCGca------GGUCGaaGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 1162 0.69 0.487005
Target:  5'- uUCCAcGCGCG-CCGGCccgCGCCGCg-- -3'
miRNA:   3'- -GGGU-CGCGCaGGUCGaa-GCGGCGgag -5'
23606 3' -61 NC_005261.1 + 1458 0.69 0.468631
Target:  5'- cCUCGGCGUGcggcUCCAGCagCGCgGCCg- -3'
miRNA:   3'- -GGGUCGCGC----AGGUCGaaGCGgCGGag -5'
23606 3' -61 NC_005261.1 + 1519 0.71 0.398989
Target:  5'- gUCgGGCGCcagcUCCAGCgcgCGCCGCC-Cg -3'
miRNA:   3'- -GGgUCGCGc---AGGUCGaa-GCGGCGGaG- -5'
23606 3' -61 NC_005261.1 + 1598 0.7 0.441759
Target:  5'- -gCGGCGCGgu-GGCUg-GCCGCCUCg -3'
miRNA:   3'- ggGUCGCGCaggUCGAagCGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 1621 0.66 0.638818
Target:  5'- gCCCuccGCGaaGUCCGGCUccccgagccccagCGCCGCgCUCu -3'
miRNA:   3'- -GGGu--CGCg-CAGGUCGAa------------GCGGCG-GAG- -5'
23606 3' -61 NC_005261.1 + 1889 0.73 0.300968
Target:  5'- -aCGGCGCGcgCCAGCgcgCGCCGCUc- -3'
miRNA:   3'- ggGUCGCGCa-GGUCGaa-GCGGCGGag -5'
23606 3' -61 NC_005261.1 + 2264 0.72 0.314759
Target:  5'- gCCGGCGCucGUCCucgccgGGCggCGCCGCCa- -3'
miRNA:   3'- gGGUCGCG--CAGG------UCGaaGCGGCGGag -5'
23606 3' -61 NC_005261.1 + 2684 0.69 0.505711
Target:  5'- aCCCGGCgGCGcgCCGGCUUUugGCCGgCg- -3'
miRNA:   3'- -GGGUCG-CGCa-GGUCGAAG--CGGCgGag -5'
23606 3' -61 NC_005261.1 + 3353 0.74 0.241257
Target:  5'- gCCCGGCGCG-CCGGcCUUCagggccgcgagcgcgGCCGCCa- -3'
miRNA:   3'- -GGGUCGCGCaGGUC-GAAG---------------CGGCGGag -5'
23606 3' -61 NC_005261.1 + 3510 0.81 0.08831
Target:  5'- gCCAGCGCGgccgccUCCAGCgcggCgGCCGCCUCg -3'
miRNA:   3'- gGGUCGCGC------AGGUCGaa--G-CGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 3548 0.67 0.612926
Target:  5'- gCgCAGCGCGgCgGGCgcggCGCCGCUa- -3'
miRNA:   3'- -GgGUCGCGCaGgUCGaa--GCGGCGGag -5'
23606 3' -61 NC_005261.1 + 3651 0.67 0.583172
Target:  5'- gCUAGCGCGUCUggAGCgcaggcCGCgGCCg- -3'
miRNA:   3'- gGGUCGCGCAGG--UCGaa----GCGgCGGag -5'
23606 3' -61 NC_005261.1 + 3734 0.77 0.162292
Target:  5'- gCCGGaCGCG-CCGGCggcgcaccgCGCCGCCUCu -3'
miRNA:   3'- gGGUC-GCGCaGGUCGaa-------GCGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 3897 0.68 0.543993
Target:  5'- gCgAGCGCGgcgCgGGCgcccgCGCCGCCg- -3'
miRNA:   3'- gGgUCGCGCa--GgUCGaa---GCGGCGGag -5'
23606 3' -61 NC_005261.1 + 4509 0.67 0.632841
Target:  5'- cCCCAgucGCGCGcCCGcGCgggCGCCGCg-- -3'
miRNA:   3'- -GGGU---CGCGCaGGU-CGaa-GCGGCGgag -5'
23606 3' -61 NC_005261.1 + 4839 0.66 0.682487
Target:  5'- -gCGGCgGCGUCC-GCgcCGCaGCCUCa -3'
miRNA:   3'- ggGUCG-CGCAGGuCGaaGCGgCGGAG- -5'
23606 3' -61 NC_005261.1 + 4887 0.67 0.611931
Target:  5'- cCUCAGcCGCGgccgCCucGGCUUCggcggcgGCUGCCUCc -3'
miRNA:   3'- -GGGUC-GCGCa---GG--UCGAAG-------CGGCGGAG- -5'
23606 3' -61 NC_005261.1 + 5120 0.77 0.174752
Target:  5'- gCUCGGCGCGggcggcccgCCGGCgcUCGCgCGCCUCg -3'
miRNA:   3'- -GGGUCGCGCa--------GGUCGa-AGCG-GCGGAG- -5'
23606 3' -61 NC_005261.1 + 7899 0.74 0.252826
Target:  5'- uUCCGGCGCGgcgCCaccagauggcgccugAGCUccauccugcUCGCCGCCUUg -3'
miRNA:   3'- -GGGUCGCGCa--GG---------------UCGA---------AGCGGCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.