miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 5' -56 NC_005261.1 + 86748 1.12 0.001512
Target:  5'- cCUGCAUCAUCGGCCAGUCGUCCAGGCa -3'
miRNA:   3'- -GACGUAGUAGCCGGUCAGCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 43371 0.8 0.224589
Target:  5'- gCUGCGgcggCAUCGGCCucgcGGUgccggcacCGUCCAGGCg -3'
miRNA:   3'- -GACGUa---GUAGCCGG----UCA--------GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 104187 0.8 0.23017
Target:  5'- -cGgGUCGUCGGgCGGgacggCGUCCAGGCg -3'
miRNA:   3'- gaCgUAGUAGCCgGUCa----GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 110511 0.76 0.351452
Target:  5'- -aGCGUCA-CGGCC-GUCGUCUgcgGGGCg -3'
miRNA:   3'- gaCGUAGUaGCCGGuCAGCAGG---UCCG- -5'
23606 5' -56 NC_005261.1 + 106656 0.76 0.359378
Target:  5'- -cGCGcUCGcCGGCgCGGUCGUCCAGcGCg -3'
miRNA:   3'- gaCGU-AGUaGCCG-GUCAGCAGGUC-CG- -5'
23606 5' -56 NC_005261.1 + 18050 0.75 0.418267
Target:  5'- -cGUaAUCGcCGGUCgAGUCGUCCAGGCc -3'
miRNA:   3'- gaCG-UAGUaGCCGG-UCAGCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 126922 0.75 0.421806
Target:  5'- uCUGCAUCcguuccagcagcgCGGCCAGgggCG-CCGGGCg -3'
miRNA:   3'- -GACGUAGua-----------GCCGGUCa--GCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 3426 0.74 0.482659
Target:  5'- -aGCG-CGcgGGCCAG-CGUCCAGGCg -3'
miRNA:   3'- gaCGUaGUagCCGGUCaGCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 82047 0.73 0.50193
Target:  5'- gUGCGUCAgcgCgGGCCAcGUCG-CCGGGUc -3'
miRNA:   3'- gACGUAGUa--G-CCGGU-CAGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 74276 0.73 0.531442
Target:  5'- -cGCGUCcgCGGCgggcggggCGGUCGccgCCGGGCa -3'
miRNA:   3'- gaCGUAGuaGCCG--------GUCAGCa--GGUCCG- -5'
23606 5' -56 NC_005261.1 + 106102 0.72 0.551462
Target:  5'- -cGCGaCGUCGGCCGG-CGUCgCcGGCg -3'
miRNA:   3'- gaCGUaGUAGCCGGUCaGCAG-GuCCG- -5'
23606 5' -56 NC_005261.1 + 72838 0.72 0.581895
Target:  5'- -gGCG--GUCGGCCAGggcgccagCGcCCAGGCg -3'
miRNA:   3'- gaCGUagUAGCCGGUCa-------GCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 107360 0.72 0.581895
Target:  5'- cCUGCGUCGUCGugggcGCCGGggcgcccgCGUCCAcgaacGGCc -3'
miRNA:   3'- -GACGUAGUAGC-----CGGUCa-------GCAGGU-----CCG- -5'
23606 5' -56 NC_005261.1 + 64165 0.72 0.592122
Target:  5'- -cGCAUCG-CGuGCaGGUgGUCCGGGCa -3'
miRNA:   3'- gaCGUAGUaGC-CGgUCAgCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 14070 0.72 0.592122
Target:  5'- -cGCGUCcagggccacGUCGGCgaagcacucgCGGUCGUCgAGGCa -3'
miRNA:   3'- gaCGUAG---------UAGCCG----------GUCAGCAGgUCCG- -5'
23606 5' -56 NC_005261.1 + 103314 0.72 0.592122
Target:  5'- cCUGCAg---CGGCagcagCAGcgCGUCCAGGCg -3'
miRNA:   3'- -GACGUaguaGCCG-----GUCa-GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 81432 0.71 0.622949
Target:  5'- -gGCGUCGUCGGCCGccccgCGg-CGGGCg -3'
miRNA:   3'- gaCGUAGUAGCCGGUca---GCagGUCCG- -5'
23606 5' -56 NC_005261.1 + 19700 0.71 0.643548
Target:  5'- -aGCAUCAuggccUCaGCCAG-CGUCgAGGCc -3'
miRNA:   3'- gaCGUAGU-----AGcCGGUCaGCAGgUCCG- -5'
23606 5' -56 NC_005261.1 + 1989 0.71 0.643548
Target:  5'- -gGcCAUCggCGGCCAGUUcgcgggGUCCAcGGCg -3'
miRNA:   3'- gaC-GUAGuaGCCGGUCAG------CAGGU-CCG- -5'
23606 5' -56 NC_005261.1 + 118349 0.7 0.664111
Target:  5'- gCUGC-UCcUCGGCCucUCGgCCGGGCg -3'
miRNA:   3'- -GACGuAGuAGCCGGucAGCaGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.