miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 5' -56 NC_005261.1 + 1179 0.7 0.714903
Target:  5'- -cGCG-CcgCGGCCGGggcCGgggCCGGGCg -3'
miRNA:   3'- gaCGUaGuaGCCGGUCa--GCa--GGUCCG- -5'
23606 5' -56 NC_005261.1 + 1989 0.71 0.643548
Target:  5'- -gGcCAUCggCGGCCAGUUcgcgggGUCCAcGGCg -3'
miRNA:   3'- gaC-GUAGuaGCCGGUCAG------CAGGU-CCG- -5'
23606 5' -56 NC_005261.1 + 2793 0.68 0.782742
Target:  5'- gCUGCcgCcggCGGCCGGgaggggCCGGGCg -3'
miRNA:   3'- -GACGuaGua-GCCGGUCagca--GGUCCG- -5'
23606 5' -56 NC_005261.1 + 3426 0.74 0.482659
Target:  5'- -aGCG-CGcgGGCCAG-CGUCCAGGCg -3'
miRNA:   3'- gaCGUaGUagCCGGUCaGCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 4152 0.67 0.835684
Target:  5'- gCUGCAgCAggCGcGCCAGcugcagGUCCGGGCc -3'
miRNA:   3'- -GACGUaGUa-GC-CGGUCag----CAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 11010 0.66 0.881916
Target:  5'- -gGCuccUCGaCGGCCucGUCG-CCGGGCc -3'
miRNA:   3'- gaCGu--AGUaGCCGGu-CAGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 12441 0.69 0.724885
Target:  5'- uUGCggCGUCGGCCGcGUCGgcgcCCcGGUa -3'
miRNA:   3'- gACGuaGUAGCCGGU-CAGCa---GGuCCG- -5'
23606 5' -56 NC_005261.1 + 12786 0.66 0.881916
Target:  5'- -gGC-UCGUCGGCgAGcUCGUCgucGGCg -3'
miRNA:   3'- gaCGuAGUAGCCGgUC-AGCAGgu-CCG- -5'
23606 5' -56 NC_005261.1 + 13075 0.68 0.782742
Target:  5'- -cGCGUCcgcCGGCCcGUCGg-CGGGCg -3'
miRNA:   3'- gaCGUAGua-GCCGGuCAGCagGUCCG- -5'
23606 5' -56 NC_005261.1 + 13117 0.68 0.796514
Target:  5'- -gGCGUCggCGGCCgcggggcgcguguGGUCGgugacggcgcgcaCCAGGCg -3'
miRNA:   3'- gaCGUAGuaGCCGG-------------UCAGCa------------GGUCCG- -5'
23606 5' -56 NC_005261.1 + 13864 0.68 0.791959
Target:  5'- -gGCGUCGccggCGGcCCGGUCGUaCAGGa -3'
miRNA:   3'- gaCGUAGUa---GCC-GGUCAGCAgGUCCg -5'
23606 5' -56 NC_005261.1 + 14070 0.72 0.592122
Target:  5'- -cGCGUCcagggccacGUCGGCgaagcacucgCGGUCGUCgAGGCa -3'
miRNA:   3'- gaCGUAG---------UAGCCG----------GUCAGCAGgUCCG- -5'
23606 5' -56 NC_005261.1 + 15293 0.66 0.881916
Target:  5'- -cGCgGUCG-CGGCCuccgGGUCGUcggagCCGGGCc -3'
miRNA:   3'- gaCG-UAGUaGCCGG----UCAGCA-----GGUCCG- -5'
23606 5' -56 NC_005261.1 + 15338 0.68 0.809947
Target:  5'- gUGCA-CAaacgCGGCCAGgggaaagaCGUCCcGGCg -3'
miRNA:   3'- gACGUaGUa---GCCGGUCa-------GCAGGuCCG- -5'
23606 5' -56 NC_005261.1 + 18050 0.75 0.418267
Target:  5'- -cGUaAUCGcCGGUCgAGUCGUCCAGGCc -3'
miRNA:   3'- gaCG-UAGUaGCCGG-UCAGCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 19109 0.69 0.724885
Target:  5'- uUGCGg-GUCaGCCGGUCGguggggCUAGGCg -3'
miRNA:   3'- gACGUagUAGcCGGUCAGCa-----GGUCCG- -5'
23606 5' -56 NC_005261.1 + 19400 0.7 0.668213
Target:  5'- -gGCucgGUgAUCGGCCcgugugccgcgccgaAGUCGcCCAGGCa -3'
miRNA:   3'- gaCG---UAgUAGCCGG---------------UCAGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 19700 0.71 0.643548
Target:  5'- -aGCAUCAuggccUCaGCCAG-CGUCgAGGCc -3'
miRNA:   3'- gaCGUAGU-----AGcCGGUCaGCAGgUCCG- -5'
23606 5' -56 NC_005261.1 + 20028 0.66 0.874741
Target:  5'- -cGCgGUCAgcgGGCCGGUucCGUCC-GGCg -3'
miRNA:   3'- gaCG-UAGUag-CCGGUCA--GCAGGuCCG- -5'
23606 5' -56 NC_005261.1 + 23430 0.68 0.818701
Target:  5'- gCUGCG-CGUCGgggcGCCAGUCcUCaGGGCa -3'
miRNA:   3'- -GACGUaGUAGC----CGGUCAGcAGgUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.