Results 1 - 20 of 84 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23606 | 5' | -56 | NC_005261.1 | + | 1179 | 0.7 | 0.714903 |
Target: 5'- -cGCG-CcgCGGCCGGggcCGgggCCGGGCg -3' miRNA: 3'- gaCGUaGuaGCCGGUCa--GCa--GGUCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 1989 | 0.71 | 0.643548 |
Target: 5'- -gGcCAUCggCGGCCAGUUcgcgggGUCCAcGGCg -3' miRNA: 3'- gaC-GUAGuaGCCGGUCAG------CAGGU-CCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 2793 | 0.68 | 0.782742 |
Target: 5'- gCUGCcgCcggCGGCCGGgaggggCCGGGCg -3' miRNA: 3'- -GACGuaGua-GCCGGUCagca--GGUCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 3426 | 0.74 | 0.482659 |
Target: 5'- -aGCG-CGcgGGCCAG-CGUCCAGGCg -3' miRNA: 3'- gaCGUaGUagCCGGUCaGCAGGUCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 4152 | 0.67 | 0.835684 |
Target: 5'- gCUGCAgCAggCGcGCCAGcugcagGUCCGGGCc -3' miRNA: 3'- -GACGUaGUa-GC-CGGUCag----CAGGUCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 11010 | 0.66 | 0.881916 |
Target: 5'- -gGCuccUCGaCGGCCucGUCG-CCGGGCc -3' miRNA: 3'- gaCGu--AGUaGCCGGu-CAGCaGGUCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 12441 | 0.69 | 0.724885 |
Target: 5'- uUGCggCGUCGGCCGcGUCGgcgcCCcGGUa -3' miRNA: 3'- gACGuaGUAGCCGGU-CAGCa---GGuCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 12786 | 0.66 | 0.881916 |
Target: 5'- -gGC-UCGUCGGCgAGcUCGUCgucGGCg -3' miRNA: 3'- gaCGuAGUAGCCGgUC-AGCAGgu-CCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 13075 | 0.68 | 0.782742 |
Target: 5'- -cGCGUCcgcCGGCCcGUCGg-CGGGCg -3' miRNA: 3'- gaCGUAGua-GCCGGuCAGCagGUCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 13117 | 0.68 | 0.796514 |
Target: 5'- -gGCGUCggCGGCCgcggggcgcguguGGUCGgugacggcgcgcaCCAGGCg -3' miRNA: 3'- gaCGUAGuaGCCGG-------------UCAGCa------------GGUCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 13864 | 0.68 | 0.791959 |
Target: 5'- -gGCGUCGccggCGGcCCGGUCGUaCAGGa -3' miRNA: 3'- gaCGUAGUa---GCC-GGUCAGCAgGUCCg -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 14070 | 0.72 | 0.592122 |
Target: 5'- -cGCGUCcagggccacGUCGGCgaagcacucgCGGUCGUCgAGGCa -3' miRNA: 3'- gaCGUAG---------UAGCCG----------GUCAGCAGgUCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 15293 | 0.66 | 0.881916 |
Target: 5'- -cGCgGUCG-CGGCCuccgGGUCGUcggagCCGGGCc -3' miRNA: 3'- gaCG-UAGUaGCCGG----UCAGCA-----GGUCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 15338 | 0.68 | 0.809947 |
Target: 5'- gUGCA-CAaacgCGGCCAGgggaaagaCGUCCcGGCg -3' miRNA: 3'- gACGUaGUa---GCCGGUCa-------GCAGGuCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 18050 | 0.75 | 0.418267 |
Target: 5'- -cGUaAUCGcCGGUCgAGUCGUCCAGGCc -3' miRNA: 3'- gaCG-UAGUaGCCGG-UCAGCAGGUCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 19109 | 0.69 | 0.724885 |
Target: 5'- uUGCGg-GUCaGCCGGUCGguggggCUAGGCg -3' miRNA: 3'- gACGUagUAGcCGGUCAGCa-----GGUCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 19400 | 0.7 | 0.668213 |
Target: 5'- -gGCucgGUgAUCGGCCcgugugccgcgccgaAGUCGcCCAGGCa -3' miRNA: 3'- gaCG---UAgUAGCCGG---------------UCAGCaGGUCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 19700 | 0.71 | 0.643548 |
Target: 5'- -aGCAUCAuggccUCaGCCAG-CGUCgAGGCc -3' miRNA: 3'- gaCGUAGU-----AGcCGGUCaGCAGgUCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 20028 | 0.66 | 0.874741 |
Target: 5'- -cGCgGUCAgcgGGCCGGUucCGUCC-GGCg -3' miRNA: 3'- gaCG-UAGUag-CCGGUCA--GCAGGuCCG- -5' |
|||||||
23606 | 5' | -56 | NC_005261.1 | + | 23430 | 0.68 | 0.818701 |
Target: 5'- gCUGCG-CGUCGgggcGCCAGUCcUCaGGGCa -3' miRNA: 3'- -GACGUaGUAGC----CGGUCAGcAGgUCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home