miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 5' -56 NC_005261.1 + 35010 0.67 0.851918
Target:  5'- cCUGCGgug-CGGCCGG-CGUCUcGGUc -3'
miRNA:   3'- -GACGUaguaGCCGGUCaGCAGGuCCG- -5'
23606 5' -56 NC_005261.1 + 43371 0.8 0.224589
Target:  5'- gCUGCGgcggCAUCGGCCucgcGGUgccggcacCGUCCAGGCg -3'
miRNA:   3'- -GACGUa---GUAGCCGG----UCA--------GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 43839 0.7 0.705859
Target:  5'- gCUGC-UCGgcgagggcgaggacgCGGCCGcGUCGUCCucGGCg -3'
miRNA:   3'- -GACGuAGUa--------------GCCGGU-CAGCAGGu-CCG- -5'
23606 5' -56 NC_005261.1 + 52383 0.69 0.754304
Target:  5'- -gGCcccgGUCGUCagGGCCugcaGGUCGUCgAGGCu -3'
miRNA:   3'- gaCG----UAGUAG--CCGG----UCAGCAGgUCCG- -5'
23606 5' -56 NC_005261.1 + 53150 0.69 0.763905
Target:  5'- -cGCGcCGUCGcGCCGccGUCGUCgGGGUc -3'
miRNA:   3'- gaCGUaGUAGC-CGGU--CAGCAGgUCCG- -5'
23606 5' -56 NC_005261.1 + 53543 0.66 0.881916
Target:  5'- uUGCGcUCuUCGGCCGcGcCGcggcCCAGGCg -3'
miRNA:   3'- gACGU-AGuAGCCGGU-CaGCa---GGUCCG- -5'
23606 5' -56 NC_005261.1 + 53809 0.7 0.684569
Target:  5'- -cGCcgCcUCGGCCAGaaacUCGUCCAuGCu -3'
miRNA:   3'- gaCGuaGuAGCCGGUC----AGCAGGUcCG- -5'
23606 5' -56 NC_005261.1 + 54341 0.66 0.895588
Target:  5'- -cGCGUaCAggucgaUGGCCAGUCccagGUCCgcGGGCa -3'
miRNA:   3'- gaCGUA-GUa-----GCCGGUCAG----CAGG--UCCG- -5'
23606 5' -56 NC_005261.1 + 58350 0.66 0.902077
Target:  5'- -aGCcgCGcCGGCCA---GUCCAGGUg -3'
miRNA:   3'- gaCGuaGUaGCCGGUcagCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 59311 0.7 0.694737
Target:  5'- -cGCGUCAaaccacUCGGCCAG-CGUgcgcgcccgCCGGGUc -3'
miRNA:   3'- gaCGUAGU------AGCCGGUCaGCA---------GGUCCG- -5'
23606 5' -56 NC_005261.1 + 59685 0.7 0.674358
Target:  5'- -aGCcgCccUCGGCCAGcacgCGcUCCGGGCa -3'
miRNA:   3'- gaCGuaGu-AGCCGGUCa---GC-AGGUCCG- -5'
23606 5' -56 NC_005261.1 + 60344 0.68 0.801031
Target:  5'- uUGCGgcgCcgCGGCCGcgCG-CCAGGCa -3'
miRNA:   3'- gACGUa--GuaGCCGGUcaGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 60828 0.7 0.684569
Target:  5'- aUGCAggagaUCAUCGGCggcggcgaGGUCGcgcgCCGGGCc -3'
miRNA:   3'- gACGU-----AGUAGCCGg-------UCAGCa---GGUCCG- -5'
23606 5' -56 NC_005261.1 + 62042 0.69 0.744594
Target:  5'- -cGCGgc-UCGGCCGG-C-UCCAGGCg -3'
miRNA:   3'- gaCGUaguAGCCGGUCaGcAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 62100 0.7 0.674358
Target:  5'- gCUGCAcgauggCGUUGGCCAcGcCGUCCugcAGGCc -3'
miRNA:   3'- -GACGUa-----GUAGCCGGU-CaGCAGG---UCCG- -5'
23606 5' -56 NC_005261.1 + 62431 0.66 0.888867
Target:  5'- -gGCcagCG-CGaGCCGGUCG-CCGGGCc -3'
miRNA:   3'- gaCGua-GUaGC-CGGUCAGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 63689 0.69 0.744594
Target:  5'- -cGCGUCAUauacagguucugCGGCguGUUGcCCAGGUc -3'
miRNA:   3'- gaCGUAGUA------------GCCGguCAGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 64165 0.72 0.592122
Target:  5'- -cGCAUCG-CGuGCaGGUgGUCCGGGCa -3'
miRNA:   3'- gaCGUAGUaGC-CGgUCAgCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 67173 0.66 0.888867
Target:  5'- -gGCGUCAcaCGGCCA--CGUgcccccCCAGGCa -3'
miRNA:   3'- gaCGUAGUa-GCCGGUcaGCA------GGUCCG- -5'
23606 5' -56 NC_005261.1 + 71069 0.68 0.791959
Target:  5'- -cGCcgCG-CGGCgGGcggggCGUCCGGGCc -3'
miRNA:   3'- gaCGuaGUaGCCGgUCa----GCAGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.