miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 5' -56 NC_005261.1 + 103314 0.72 0.592122
Target:  5'- cCUGCAg---CGGCagcagCAGcgCGUCCAGGCg -3'
miRNA:   3'- -GACGUaguaGCCG-----GUCa-GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 102831 0.66 0.904607
Target:  5'- uCUGCGccUCGcgccgcgccacgugcUgGGCCAGcagcgCGUCCAGGa -3'
miRNA:   3'- -GACGU--AGU---------------AgCCGGUCa----GCAGGUCCg -5'
23606 5' -56 NC_005261.1 + 100989 0.66 0.874741
Target:  5'- -cGCGUCGccgcgcUCcGCCAGccgcgCGUCCAGcGCg -3'
miRNA:   3'- gaCGUAGU------AGcCGGUCa----GCAGGUC-CG- -5'
23606 5' -56 NC_005261.1 + 100787 0.66 0.888867
Target:  5'- -cGCGUCcgCaGGCCAGcagGUCCcggaaGGGCg -3'
miRNA:   3'- gaCGUAGuaG-CCGGUCag-CAGG-----UCCG- -5'
23606 5' -56 NC_005261.1 + 99920 0.67 0.843899
Target:  5'- -aGCG-CcUCGGCCAGgacacCGUCCAGcGUc -3'
miRNA:   3'- gaCGUaGuAGCCGGUCa----GCAGGUC-CG- -5'
23606 5' -56 NC_005261.1 + 99530 0.68 0.818701
Target:  5'- gUGCAcCGUCGa--GGgcgCGUCCAGGCg -3'
miRNA:   3'- gACGUaGUAGCcggUCa--GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 98961 0.68 0.818701
Target:  5'- -aGCGUCAggcUCGGCaggucccggagCAcGUCGUCCucGGCa -3'
miRNA:   3'- gaCGUAGU---AGCCG-----------GU-CAGCAGGu-CCG- -5'
23606 5' -56 NC_005261.1 + 96951 0.68 0.818701
Target:  5'- -gGCG-CAUCGGCgGGgcagcCG-CCGGGCg -3'
miRNA:   3'- gaCGUaGUAGCCGgUCa----GCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 94459 0.66 0.888867
Target:  5'- -cGCGUCccccuccgcGUCGGC--GUCGUCCcgcGGGCc -3'
miRNA:   3'- gaCGUAG---------UAGCCGguCAGCAGG---UCCG- -5'
23606 5' -56 NC_005261.1 + 94369 0.7 0.704851
Target:  5'- -aGCG-CA-CGGCCGGUCGauggCCAGcGCg -3'
miRNA:   3'- gaCGUaGUaGCCGGUCAGCa---GGUC-CG- -5'
23606 5' -56 NC_005261.1 + 92793 0.67 0.843899
Target:  5'- -gGgGUCGg-GGuCCGGUCG-CCGGGCg -3'
miRNA:   3'- gaCgUAGUagCC-GGUCAGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 89859 0.68 0.818701
Target:  5'- -gGCGUCAUCGGCgAGUacugcaUUCAGGa -3'
miRNA:   3'- gaCGUAGUAGCCGgUCAgc----AGGUCCg -5'
23606 5' -56 NC_005261.1 + 87559 0.66 0.902077
Target:  5'- -gGCGUCAgcUUGGCCGucagccccgcGcCGcCCAGGCc -3'
miRNA:   3'- gaCGUAGU--AGCCGGU----------CaGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 87478 0.69 0.763905
Target:  5'- -cGCGUCAgguUCGGCgCGGcCGUgCuGGCg -3'
miRNA:   3'- gaCGUAGU---AGCCG-GUCaGCAgGuCCG- -5'
23606 5' -56 NC_005261.1 + 87383 0.66 0.902077
Target:  5'- -gGCAgaugUCcUCGGCC-GUCGUCUcgacGGCg -3'
miRNA:   3'- gaCGU----AGuAGCCGGuCAGCAGGu---CCG- -5'
23606 5' -56 NC_005261.1 + 87024 0.67 0.843899
Target:  5'- -cGCGgccCcgCGcGCCAccgCGUCCAGGCu -3'
miRNA:   3'- gaCGUa--GuaGC-CGGUca-GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 86748 1.12 0.001512
Target:  5'- cCUGCAUCAUCGGCCAGUCGUCCAGGCa -3'
miRNA:   3'- -GACGUAGUAGCCGGUCAGCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 85120 0.68 0.773387
Target:  5'- aCUGCGcCAgcUCGGCCAcGUUG-CCcGGCg -3'
miRNA:   3'- -GACGUaGU--AGCCGGU-CAGCaGGuCCG- -5'
23606 5' -56 NC_005261.1 + 84495 0.7 0.704851
Target:  5'- -aGCAaagaacUCGUCcuccaccagGGCCgcccAGUCGUCCAGGUc -3'
miRNA:   3'- gaCGU------AGUAG---------CCGG----UCAGCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 82047 0.73 0.50193
Target:  5'- gUGCGUCAgcgCgGGCCAcGUCG-CCGGGUc -3'
miRNA:   3'- gACGUAGUa--G-CCGGU-CAGCaGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.