miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 5' -56 NC_005261.1 + 136933 0.66 0.874741
Target:  5'- -cGCAUguggugguaCAUgGGCCGcGUCGU-CGGGCa -3'
miRNA:   3'- gaCGUA---------GUAgCCGGU-CAGCAgGUCCG- -5'
23606 5' -56 NC_005261.1 + 126922 0.75 0.421806
Target:  5'- uCUGCAUCcguuccagcagcgCGGCCAGgggCG-CCGGGCg -3'
miRNA:   3'- -GACGUAGua-----------GCCGGUCa--GCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 124865 0.67 0.827282
Target:  5'- -gGCGUCGUC-GCCuucGUCGUCU-GGCc -3'
miRNA:   3'- gaCGUAGUAGcCGGu--CAGCAGGuCCG- -5'
23606 5' -56 NC_005261.1 + 122286 0.66 0.881916
Target:  5'- -aGCAUCAgcgCGGCCccgcugccgcAGgcgaCGcCCGGGCc -3'
miRNA:   3'- gaCGUAGUa--GCCGG----------UCa---GCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 118349 0.7 0.664111
Target:  5'- gCUGC-UCcUCGGCCucUCGgCCGGGCg -3'
miRNA:   3'- -GACGuAGuAGCCGGucAGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 115752 0.67 0.827282
Target:  5'- -cGCAcacgUCGUCGGCCc--CGUCUcGGCg -3'
miRNA:   3'- gaCGU----AGUAGCCGGucaGCAGGuCCG- -5'
23606 5' -56 NC_005261.1 + 115541 0.67 0.843899
Target:  5'- -aGCAUCggCGGCUGGUgcagGUCCGuguGGCa -3'
miRNA:   3'- gaCGUAGuaGCCGGUCAg---CAGGU---CCG- -5'
23606 5' -56 NC_005261.1 + 110511 0.76 0.351452
Target:  5'- -aGCGUCA-CGGCC-GUCGUCUgcgGGGCg -3'
miRNA:   3'- gaCGUAGUaGCCGGuCAGCAGG---UCCG- -5'
23606 5' -56 NC_005261.1 + 108458 0.68 0.801031
Target:  5'- -cGCGUCGUCGGCgAGgaucuccgCGUC--GGCg -3'
miRNA:   3'- gaCGUAGUAGCCGgUCa-------GCAGguCCG- -5'
23606 5' -56 NC_005261.1 + 108160 0.7 0.694737
Target:  5'- cCUGCAgcgCGUCcGCCAGggcgCGcggccgcggcUCCGGGCg -3'
miRNA:   3'- -GACGUa--GUAGcCGGUCa---GC----------AGGUCCG- -5'
23606 5' -56 NC_005261.1 + 107535 0.66 0.901439
Target:  5'- -cGCGUCggCGGCCAccagcaCGUCCGagagcacGGCa -3'
miRNA:   3'- gaCGUAGuaGCCGGUca----GCAGGU-------CCG- -5'
23606 5' -56 NC_005261.1 + 107360 0.72 0.581895
Target:  5'- cCUGCGUCGUCGugggcGCCGGggcgcccgCGUCCAcgaacGGCc -3'
miRNA:   3'- -GACGUAGUAGC-----CGGUCa-------GCAGGU-----CCG- -5'
23606 5' -56 NC_005261.1 + 106656 0.76 0.359378
Target:  5'- -cGCGcUCGcCGGCgCGGUCGUCCAGcGCg -3'
miRNA:   3'- gaCGU-AGUaGCCG-GUCAGCAGGUC-CG- -5'
23606 5' -56 NC_005261.1 + 106537 0.67 0.835684
Target:  5'- -cGCcUCcUCGGCggCGGccgCGUCCGGGCc -3'
miRNA:   3'- gaCGuAGuAGCCG--GUCa--GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 106102 0.72 0.551462
Target:  5'- -cGCGaCGUCGGCCGG-CGUCgCcGGCg -3'
miRNA:   3'- gaCGUaGUAGCCGGUCaGCAG-GuCCG- -5'
23606 5' -56 NC_005261.1 + 105408 0.67 0.827282
Target:  5'- -cGCucgaCGUagGGCUcGUCGUCCAGGUa -3'
miRNA:   3'- gaCGua--GUAg-CCGGuCAGCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 104334 0.67 0.859736
Target:  5'- -cGCGUCcagCGGCCGGcCGUCgcgCAGcGCc -3'
miRNA:   3'- gaCGUAGua-GCCGGUCaGCAG---GUC-CG- -5'
23606 5' -56 NC_005261.1 + 104187 0.8 0.23017
Target:  5'- -cGgGUCGUCGGgCGGgacggCGUCCAGGCg -3'
miRNA:   3'- gaCgUAGUAGCCgGUCa----GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 104051 0.67 0.827282
Target:  5'- aCUGCcgCAgcgccUCGGCCgcgAGcgCGUCCAgcucGGCg -3'
miRNA:   3'- -GACGuaGU-----AGCCGG---UCa-GCAGGU----CCG- -5'
23606 5' -56 NC_005261.1 + 103497 0.66 0.867345
Target:  5'- -aGaCGUCGUCGGCgccgcggacggCGG-CGUCCGcGGCa -3'
miRNA:   3'- gaC-GUAGUAGCCG-----------GUCaGCAGGU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.