miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23606 5' -56 NC_005261.1 + 35010 0.67 0.851918
Target:  5'- cCUGCGgug-CGGCCGG-CGUCUcGGUc -3'
miRNA:   3'- -GACGUaguaGCCGGUCaGCAGGuCCG- -5'
23606 5' -56 NC_005261.1 + 87024 0.67 0.843899
Target:  5'- -cGCGgccCcgCGcGCCAccgCGUCCAGGCu -3'
miRNA:   3'- gaCGUa--GuaGC-CGGUca-GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 81323 0.67 0.843899
Target:  5'- -gGgGUCGUC-GCC-GUCGUCgGGGCc -3'
miRNA:   3'- gaCgUAGUAGcCGGuCAGCAGgUCCG- -5'
23606 5' -56 NC_005261.1 + 115541 0.67 0.843899
Target:  5'- -aGCAUCggCGGCUGGUgcagGUCCGuguGGCa -3'
miRNA:   3'- gaCGUAGuaGCCGGUCAg---CAGGU---CCG- -5'
23606 5' -56 NC_005261.1 + 99920 0.67 0.843899
Target:  5'- -aGCG-CcUCGGCCAGgacacCGUCCAGcGUc -3'
miRNA:   3'- gaCGUaGuAGCCGGUCa----GCAGGUC-CG- -5'
23606 5' -56 NC_005261.1 + 92793 0.67 0.843899
Target:  5'- -gGgGUCGg-GGuCCGGUCG-CCGGGCg -3'
miRNA:   3'- gaCgUAGUagCC-GGUCAGCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 106537 0.67 0.835684
Target:  5'- -cGCcUCcUCGGCggCGGccgCGUCCGGGCc -3'
miRNA:   3'- gaCGuAGuAGCCG--GUCa--GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 4152 0.67 0.835684
Target:  5'- gCUGCAgCAggCGcGCCAGcugcagGUCCGGGCc -3'
miRNA:   3'- -GACGUaGUa-GC-CGGUCag----CAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 104051 0.67 0.827282
Target:  5'- aCUGCcgCAgcgccUCGGCCgcgAGcgCGUCCAgcucGGCg -3'
miRNA:   3'- -GACGuaGU-----AGCCGG---UCa-GCAGGU----CCG- -5'
23606 5' -56 NC_005261.1 + 115752 0.67 0.827282
Target:  5'- -cGCAcacgUCGUCGGCCc--CGUCUcGGCg -3'
miRNA:   3'- gaCGU----AGUAGCCGGucaGCAGGuCCG- -5'
23606 5' -56 NC_005261.1 + 124865 0.67 0.827282
Target:  5'- -gGCGUCGUC-GCCuucGUCGUCU-GGCc -3'
miRNA:   3'- gaCGUAGUAGcCGGu--CAGCAGGuCCG- -5'
23606 5' -56 NC_005261.1 + 105408 0.67 0.827282
Target:  5'- -cGCucgaCGUagGGCUcGUCGUCCAGGUa -3'
miRNA:   3'- gaCGua--GUAg-CCGGuCAGCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 99530 0.68 0.818701
Target:  5'- gUGCAcCGUCGa--GGgcgCGUCCAGGCg -3'
miRNA:   3'- gACGUaGUAGCcggUCa--GCAGGUCCG- -5'
23606 5' -56 NC_005261.1 + 96951 0.68 0.818701
Target:  5'- -gGCG-CAUCGGCgGGgcagcCG-CCGGGCg -3'
miRNA:   3'- gaCGUaGUAGCCGgUCa----GCaGGUCCG- -5'
23606 5' -56 NC_005261.1 + 98961 0.68 0.818701
Target:  5'- -aGCGUCAggcUCGGCaggucccggagCAcGUCGUCCucGGCa -3'
miRNA:   3'- gaCGUAGU---AGCCG-----------GU-CAGCAGGu-CCG- -5'
23606 5' -56 NC_005261.1 + 89859 0.68 0.818701
Target:  5'- -gGCGUCAUCGGCgAGUacugcaUUCAGGa -3'
miRNA:   3'- gaCGUAGUAGCCGgUCAgc----AGGUCCg -5'
23606 5' -56 NC_005261.1 + 23430 0.68 0.818701
Target:  5'- gCUGCG-CGUCGgggcGCCAGUCcUCaGGGCa -3'
miRNA:   3'- -GACGUaGUAGC----CGGUCAGcAGgUCCG- -5'
23606 5' -56 NC_005261.1 + 15338 0.68 0.809947
Target:  5'- gUGCA-CAaacgCGGCCAGgggaaagaCGUCCcGGCg -3'
miRNA:   3'- gACGUaGUa---GCCGGUCa-------GCAGGuCCG- -5'
23606 5' -56 NC_005261.1 + 108458 0.68 0.801031
Target:  5'- -cGCGUCGUCGGCgAGgaucuccgCGUC--GGCg -3'
miRNA:   3'- gaCGUAGUAGCCGgUCa-------GCAGguCCG- -5'
23606 5' -56 NC_005261.1 + 60344 0.68 0.801031
Target:  5'- uUGCGgcgCcgCGGCCGcgCG-CCAGGCa -3'
miRNA:   3'- gACGUa--GuaGCCGGUcaGCaGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.