miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23607 3' -62 NC_005261.1 + 86300 0.94 0.008926
Target:  5'- cAGGGCACGUCGCCCUCCAGCGuG-CUGg -3'
miRNA:   3'- -UCCCGUGCAGCGGGAGGUCGC-CaGAC- -5'
23607 3' -62 NC_005261.1 + 51440 0.74 0.229721
Target:  5'- cGGGCGCGcCGUgaugaucaaCCUggCCGGCGGUCUGc -3'
miRNA:   3'- uCCCGUGCaGCG---------GGA--GGUCGCCAGAC- -5'
23607 3' -62 NC_005261.1 + 83523 0.73 0.27038
Target:  5'- aAGcGGCACG-CGCCCUCCAGCcccauGGUg-- -3'
miRNA:   3'- -UC-CCGUGCaGCGGGAGGUCG-----CCAgac -5'
23607 3' -62 NC_005261.1 + 101961 0.72 0.289507
Target:  5'- cGGGGCACGgccgccaggUCGCCCUCCAGguacGUCa- -3'
miRNA:   3'- -UCCCGUGC---------AGCGGGAGGUCgc--CAGac -5'
23607 3' -62 NC_005261.1 + 4439 0.71 0.315936
Target:  5'- gAGGGCgucagcaGCGg-GCCCUCCAGCGG-Cg- -3'
miRNA:   3'- -UCCCG-------UGCagCGGGAGGUCGCCaGac -5'
23607 3' -62 NC_005261.1 + 13312 0.71 0.337477
Target:  5'- gGGGGCcucguACGcagCGCCCUcgcacucgcgcggCCAGCGGUCg- -3'
miRNA:   3'- -UCCCG-----UGCa--GCGGGA-------------GGUCGCCAGac -5'
23607 3' -62 NC_005261.1 + 1570 0.7 0.360839
Target:  5'- cAGcGGCGCGccgaGCCC-CCAGCGGUUg- -3'
miRNA:   3'- -UC-CCGUGCag--CGGGaGGUCGCCAGac -5'
23607 3' -62 NC_005261.1 + 97419 0.7 0.368612
Target:  5'- cGGGCGCGccgggccUGCCCUUgGGCgcgGGUCUGg -3'
miRNA:   3'- uCCCGUGCa------GCGGGAGgUCG---CCAGAC- -5'
23607 3' -62 NC_005261.1 + 29275 0.7 0.368612
Target:  5'- gAGGGCcCGcugcugaCGCCCUCCGGCgaGGcCUGg -3'
miRNA:   3'- -UCCCGuGCa------GCGGGAGGUCG--CCaGAC- -5'
23607 3' -62 NC_005261.1 + 137856 0.7 0.377293
Target:  5'- cGGGGCugG-CGCCCcuggugcucccggggCCAGCGGUg-- -3'
miRNA:   3'- -UCCCGugCaGCGGGa--------------GGUCGCCAgac -5'
23607 3' -62 NC_005261.1 + 173 0.7 0.377293
Target:  5'- cGGGGCugG-CGCCCcuggugcucccggggCCAGCGGUg-- -3'
miRNA:   3'- -UCCCGugCaGCGGGa--------------GGUCGCCAgac -5'
23607 3' -62 NC_005261.1 + 104442 0.7 0.39261
Target:  5'- cGGGCccGCGUCGCCgCcgCCGGCGG-Cg- -3'
miRNA:   3'- uCCCG--UGCAGCGG-Ga-GGUCGCCaGac -5'
23607 3' -62 NC_005261.1 + 92858 0.7 0.409163
Target:  5'- cGGGCcCGgcCGCaCCUCCcGCGGUCa- -3'
miRNA:   3'- uCCCGuGCa-GCG-GGAGGuCGCCAGac -5'
23607 3' -62 NC_005261.1 + 46110 0.7 0.409163
Target:  5'- gGGGGC-CGUgGUCCgcgUCCAGCaGGUCg- -3'
miRNA:   3'- -UCCCGuGCAgCGGG---AGGUCG-CCAGac -5'
23607 3' -62 NC_005261.1 + 131676 0.69 0.4176
Target:  5'- gAGGGUGCGacCGCCCUgCGcGCGGcgCUGg -3'
miRNA:   3'- -UCCCGUGCa-GCGGGAgGU-CGCCa-GAC- -5'
23607 3' -62 NC_005261.1 + 13071 0.69 0.426143
Target:  5'- cGGGCGCGUCcgccgGCCCgUCGGCGGg--- -3'
miRNA:   3'- uCCCGUGCAG-----CGGGaGGUCGCCagac -5'
23607 3' -62 NC_005261.1 + 43849 0.69 0.43479
Target:  5'- gAGGGCgaggacgcggccGCGUCGUCCUC-GGCGGcgcggCUGa -3'
miRNA:   3'- -UCCCG------------UGCAGCGGGAGgUCGCCa----GAC- -5'
23607 3' -62 NC_005261.1 + 31323 0.69 0.43479
Target:  5'- cGGGCGCGcUCGCCg-CCAGCGcGccgCUGc -3'
miRNA:   3'- uCCCGUGC-AGCGGgaGGUCGC-Ca--GAC- -5'
23607 3' -62 NC_005261.1 + 90209 0.69 0.443537
Target:  5'- gGGGGCgGCGgagCGCCCUCgcgCGGCGGg--- -3'
miRNA:   3'- -UCCCG-UGCa--GCGGGAG---GUCGCCagac -5'
23607 3' -62 NC_005261.1 + 43809 0.69 0.443537
Target:  5'- gGGGGCGcCGggcgCGCCCUCC-GUGGagaagCUGc -3'
miRNA:   3'- -UCCCGU-GCa---GCGGGAGGuCGCCa----GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.