miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23607 3' -62 NC_005261.1 + 173 0.7 0.377293
Target:  5'- cGGGGCugG-CGCCCcuggugcucccggggCCAGCGGUg-- -3'
miRNA:   3'- -UCCCGugCaGCGGGa--------------GGUCGCCAgac -5'
23607 3' -62 NC_005261.1 + 1570 0.7 0.360839
Target:  5'- cAGcGGCGCGccgaGCCC-CCAGCGGUUg- -3'
miRNA:   3'- -UC-CCGUGCag--CGGGaGGUCGCCAGac -5'
23607 3' -62 NC_005261.1 + 4439 0.71 0.315936
Target:  5'- gAGGGCgucagcaGCGg-GCCCUCCAGCGG-Cg- -3'
miRNA:   3'- -UCCCG-------UGCagCGGGAGGUCGCCaGac -5'
23607 3' -62 NC_005261.1 + 10532 0.66 0.614197
Target:  5'- cGGcGCGCucgcuGUCGCCC-CCGGCGcGcCUGc -3'
miRNA:   3'- uCC-CGUG-----CAGCGGGaGGUCGC-CaGAC- -5'
23607 3' -62 NC_005261.1 + 11055 0.67 0.526297
Target:  5'- cGGGCGC--CGCCCaggcgccgCCAGCGcGUCUa -3'
miRNA:   3'- uCCCGUGcaGCGGGa-------GGUCGC-CAGAc -5'
23607 3' -62 NC_005261.1 + 13071 0.69 0.426143
Target:  5'- cGGGCGCGUCcgccgGCCCgUCGGCGGg--- -3'
miRNA:   3'- uCCCGUGCAG-----CGGGaGGUCGCCagac -5'
23607 3' -62 NC_005261.1 + 13312 0.71 0.337477
Target:  5'- gGGGGCcucguACGcagCGCCCUcgcacucgcgcggCCAGCGGUCg- -3'
miRNA:   3'- -UCCCG-----UGCa--GCGGGA-------------GGUCGCCAGac -5'
23607 3' -62 NC_005261.1 + 14454 0.66 0.588495
Target:  5'- cGGGGCGCGcggcggagcucgcgcUgGUCCUCCAacGCGGUgUa -3'
miRNA:   3'- -UCCCGUGC---------------AgCGGGAGGU--CGCCAgAc -5'
23607 3' -62 NC_005261.1 + 16293 0.68 0.497975
Target:  5'- gGGGGCGcCGUCggGCCCagCGGCGGcCg- -3'
miRNA:   3'- -UCCCGU-GCAG--CGGGagGUCGCCaGac -5'
23607 3' -62 NC_005261.1 + 17547 0.68 0.516785
Target:  5'- gGGcGGCGCGggccCGCCgUUCGGCGGUg-- -3'
miRNA:   3'- -UC-CCGUGCa---GCGGgAGGUCGCCAgac -5'
23607 3' -62 NC_005261.1 + 18731 0.69 0.461322
Target:  5'- cGGGCGCGgggCGCCCcaaaaCAGCGGcCc- -3'
miRNA:   3'- uCCCGUGCa--GCGGGag---GUCGCCaGac -5'
23607 3' -62 NC_005261.1 + 28269 0.67 0.555203
Target:  5'- gGGGGCGCuGUUGCCgCcgCCGcggccGCGGUCg- -3'
miRNA:   3'- -UCCCGUG-CAGCGG-Ga-GGU-----CGCCAGac -5'
23607 3' -62 NC_005261.1 + 29275 0.7 0.368612
Target:  5'- gAGGGCcCGcugcugaCGCCCUCCGGCgaGGcCUGg -3'
miRNA:   3'- -UCCCGuGCa------GCGGGAGGUCG--CCaGAC- -5'
23607 3' -62 NC_005261.1 + 31323 0.69 0.43479
Target:  5'- cGGGCGCGcUCGCCg-CCAGCGcGccgCUGc -3'
miRNA:   3'- uCCCGUGC-AGCGGgaGGUCGC-Ca--GAC- -5'
23607 3' -62 NC_005261.1 + 33111 0.68 0.488685
Target:  5'- cGGGCAC-UCGCCCUCC-GCGa---- -3'
miRNA:   3'- uCCCGUGcAGCGGGAGGuCGCcagac -5'
23607 3' -62 NC_005261.1 + 33866 0.69 0.461322
Target:  5'- gAGGGCccccCGcCGCCCgccUCCGGCGcGUCa- -3'
miRNA:   3'- -UCCCGu---GCaGCGGG---AGGUCGC-CAGac -5'
23607 3' -62 NC_005261.1 + 34457 0.66 0.592438
Target:  5'- cGGGGCACGggccgggggcccCGUaCCUgCGGCGGgugCUGg -3'
miRNA:   3'- -UCCCGUGCa-----------GCG-GGAgGUCGCCa--GAC- -5'
23607 3' -62 NC_005261.1 + 34937 0.68 0.516785
Target:  5'- gGGGGCGgcCGgcgCGaCCCgggcCCGGCGGcCUGg -3'
miRNA:   3'- -UCCCGU--GCa--GC-GGGa---GGUCGCCaGAC- -5'
23607 3' -62 NC_005261.1 + 35038 0.66 0.624111
Target:  5'- -uGGCGCGcCGCCCUaaCGGCGGcCg- -3'
miRNA:   3'- ucCCGUGCaGCGGGAg-GUCGCCaGac -5'
23607 3' -62 NC_005261.1 + 40726 0.69 0.461322
Target:  5'- gGGGGCGCGUgggcguaGCCCaUCAGCguguaugugucGGUCUGc -3'
miRNA:   3'- -UCCCGUGCAg------CGGGaGGUCG-----------CCAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.