miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23607 3' -62 NC_005261.1 + 137856 0.7 0.377293
Target:  5'- cGGGGCugG-CGCCCcuggugcucccggggCCAGCGGUg-- -3'
miRNA:   3'- -UCCCGugCaGCGGGa--------------GGUCGCCAgac -5'
23607 3' -62 NC_005261.1 + 131676 0.69 0.4176
Target:  5'- gAGGGUGCGacCGCCCUgCGcGCGGcgCUGg -3'
miRNA:   3'- -UCCCGUGCa-GCGGGAgGU-CGCCa-GAC- -5'
23607 3' -62 NC_005261.1 + 122311 0.67 0.545511
Target:  5'- -aGGCGa--CGCCCgggCCGGCGGUCa- -3'
miRNA:   3'- ucCCGUgcaGCGGGa--GGUCGCCAGac -5'
23607 3' -62 NC_005261.1 + 119655 0.68 0.497975
Target:  5'- cGGcGGCGCG-CGCCUggagcucugguUCCAGCGcGUCg- -3'
miRNA:   3'- -UC-CCGUGCaGCGGG-----------AGGUCGC-CAGac -5'
23607 3' -62 NC_005261.1 + 116195 0.67 0.564945
Target:  5'- uGGGCGCGUCGCCgcagaagcgCUCCAggaGCGuGUa-- -3'
miRNA:   3'- uCCCGUGCAGCGG---------GAGGU---CGC-CAgac -5'
23607 3' -62 NC_005261.1 + 109341 0.67 0.545511
Target:  5'- cGGGGUcggcggccGCGUCGCCgUCCAGCcGcUCg- -3'
miRNA:   3'- -UCCCG--------UGCAGCGGgAGGUCGcC-AGac -5'
23607 3' -62 NC_005261.1 + 104442 0.7 0.39261
Target:  5'- cGGGCccGCGUCGCCgCcgCCGGCGG-Cg- -3'
miRNA:   3'- uCCCG--UGCAGCGG-Ga-GGUCGCCaGac -5'
23607 3' -62 NC_005261.1 + 104225 0.66 0.614197
Target:  5'- -cGGCGCGcaccgUGCCCUCCAGCGc---- -3'
miRNA:   3'- ucCCGUGCa----GCGGGAGGUCGCcagac -5'
23607 3' -62 NC_005261.1 + 101961 0.72 0.289507
Target:  5'- cGGGGCACGgccgccaggUCGCCCUCCAGguacGUCa- -3'
miRNA:   3'- -UCCCGUGC---------AGCGGGAGGUCgc--CAGac -5'
23607 3' -62 NC_005261.1 + 98982 0.66 0.624111
Target:  5'- cGGaGCACGUCGUCCUCggcaaucuuCAGC-GUCg- -3'
miRNA:   3'- uCC-CGUGCAGCGGGAG---------GUCGcCAGac -5'
23607 3' -62 NC_005261.1 + 98310 0.66 0.594412
Target:  5'- gGGGGCggGCGcCGCCg-CCAGCGG-Cg- -3'
miRNA:   3'- -UCCCG--UGCaGCGGgaGGUCGCCaGac -5'
23607 3' -62 NC_005261.1 + 97419 0.7 0.368612
Target:  5'- cGGGCGCGccgggccUGCCCUUgGGCgcgGGUCUGg -3'
miRNA:   3'- uCCCGUGCa------GCGGGAGgUCG---CCAGAC- -5'
23607 3' -62 NC_005261.1 + 93945 0.66 0.594412
Target:  5'- cGGGCGC--CGCCUcCgGGCGGUCg- -3'
miRNA:   3'- uCCCGUGcaGCGGGaGgUCGCCAGac -5'
23607 3' -62 NC_005261.1 + 93542 0.68 0.507343
Target:  5'- cGcGCGCGcCGCCCagUAGCGGUCg- -3'
miRNA:   3'- uCcCGUGCaGCGGGagGUCGCCAGac -5'
23607 3' -62 NC_005261.1 + 93479 0.67 0.545511
Target:  5'- gGGGcGCGCGUCGCCCg-CGGCGa---- -3'
miRNA:   3'- -UCC-CGUGCAGCGGGagGUCGCcagac -5'
23607 3' -62 NC_005261.1 + 92858 0.7 0.409163
Target:  5'- cGGGCcCGgcCGCaCCUCCcGCGGUCa- -3'
miRNA:   3'- uCCCGuGCa-GCG-GGAGGuCGCCAGac -5'
23607 3' -62 NC_005261.1 + 90209 0.69 0.443537
Target:  5'- gGGGGCgGCGgagCGCCCUCgcgCGGCGGg--- -3'
miRNA:   3'- -UCCCG-UGCa--GCGGGAG---GUCGCCagac -5'
23607 3' -62 NC_005261.1 + 86300 0.94 0.008926
Target:  5'- cAGGGCACGUCGCCCUCCAGCGuG-CUGg -3'
miRNA:   3'- -UCCCGUGCAGCGGGAGGUCGC-CaGAC- -5'
23607 3' -62 NC_005261.1 + 83601 0.67 0.525343
Target:  5'- --aGCGCGUCGCUCUCCGccgcggcGUGGUCc- -3'
miRNA:   3'- uccCGUGCAGCGGGAGGU-------CGCCAGac -5'
23607 3' -62 NC_005261.1 + 83523 0.73 0.27038
Target:  5'- aAGcGGCACG-CGCCCUCCAGCcccauGGUg-- -3'
miRNA:   3'- -UC-CCGUGCaGCGGGAGGUCG-----CCAgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.