miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23607 3' -62 NC_005261.1 + 43415 0.66 0.624111
Target:  5'- cGGGgGCGgccucCGCCg-CCGGCGGggagCUGg -3'
miRNA:   3'- uCCCgUGCa----GCGGgaGGUCGCCa---GAC- -5'
23607 3' -62 NC_005261.1 + 43809 0.69 0.443537
Target:  5'- gGGGGCGcCGggcgCGCCCUCC-GUGGagaagCUGc -3'
miRNA:   3'- -UCCCGU-GCa---GCGGGAGGuCGCCa----GAC- -5'
23607 3' -62 NC_005261.1 + 43849 0.69 0.43479
Target:  5'- gAGGGCgaggacgcggccGCGUCGUCCUC-GGCGGcgcggCUGa -3'
miRNA:   3'- -UCCCG------------UGCAGCGGGAGgUCGCCa----GAC- -5'
23607 3' -62 NC_005261.1 + 44274 0.69 0.461322
Target:  5'- gGGGGgGCGggGCCCgccgCCAGCGG-Cg- -3'
miRNA:   3'- -UCCCgUGCagCGGGa---GGUCGCCaGac -5'
23607 3' -62 NC_005261.1 + 46110 0.7 0.409163
Target:  5'- gGGGGC-CGUgGUCCgcgUCCAGCaGGUCg- -3'
miRNA:   3'- -UCCCGuGCAgCGGG---AGGUCG-CCAGac -5'
23607 3' -62 NC_005261.1 + 46182 0.66 0.604295
Target:  5'- uGGGCGCaGUCGCgCUCCAaaaGCGcacGUCg- -3'
miRNA:   3'- uCCCGUG-CAGCGgGAGGU---CGC---CAGac -5'
23607 3' -62 NC_005261.1 + 49797 0.66 0.624111
Target:  5'- cAGcGCgagACGUCGCCCUCC-GCGGg--- -3'
miRNA:   3'- -UCcCG---UGCAGCGGGAGGuCGCCagac -5'
23607 3' -62 NC_005261.1 + 51440 0.74 0.229721
Target:  5'- cGGGCGCGcCGUgaugaucaaCCUggCCGGCGGUCUGc -3'
miRNA:   3'- uCCCGUGCaGCG---------GGA--GGUCGCCAGAC- -5'
23607 3' -62 NC_005261.1 + 54490 0.66 0.584555
Target:  5'- cGGGCggcaggcgcaaACGcaggCGCCCUCCGGCGacggcGUCa- -3'
miRNA:   3'- uCCCG-----------UGCa---GCGGGAGGUCGC-----CAGac -5'
23607 3' -62 NC_005261.1 + 58088 0.67 0.545511
Target:  5'- cAGGGCcCG-CGUCCUCgGGCGG-Ca- -3'
miRNA:   3'- -UCCCGuGCaGCGGGAGgUCGCCaGac -5'
23607 3' -62 NC_005261.1 + 61635 0.66 0.584555
Target:  5'- --cGCugGcCGCCCguccgCCGGCGGaCUGa -3'
miRNA:   3'- uccCGugCaGCGGGa----GGUCGCCaGAC- -5'
23607 3' -62 NC_005261.1 + 61947 0.67 0.526297
Target:  5'- cGGGGCGCGcgccgaccgCGUCCcCCAGCcgGGUCg- -3'
miRNA:   3'- -UCCCGUGCa--------GCGGGaGGUCG--CCAGac -5'
23607 3' -62 NC_005261.1 + 63026 0.68 0.497975
Target:  5'- cGGGCGCcggCGCCCgcggCgaGGCGGUCg- -3'
miRNA:   3'- uCCCGUGca-GCGGGa---Gg-UCGCCAGac -5'
23607 3' -62 NC_005261.1 + 74460 0.66 0.634032
Target:  5'- uGGGgGCGcCGCCC-CCGGCGcGgcgugcCUGg -3'
miRNA:   3'- uCCCgUGCaGCGGGaGGUCGC-Ca-----GAC- -5'
23607 3' -62 NC_005261.1 + 80887 0.66 0.634032
Target:  5'- cGGGCuucaGCGgCGCCUcCCAGgGGUCc- -3'
miRNA:   3'- uCCCG----UGCaGCGGGaGGUCgCCAGac -5'
23607 3' -62 NC_005261.1 + 81678 0.67 0.554231
Target:  5'- uGGGGCACGacugcCGCCCgUCCGGgcccggcgccguuCGGUCc- -3'
miRNA:   3'- -UCCCGUGCa----GCGGG-AGGUC-------------GCCAGac -5'
23607 3' -62 NC_005261.1 + 83523 0.73 0.27038
Target:  5'- aAGcGGCACG-CGCCCUCCAGCcccauGGUg-- -3'
miRNA:   3'- -UC-CCGUGCaGCGGGAGGUCG-----CCAgac -5'
23607 3' -62 NC_005261.1 + 83601 0.67 0.525343
Target:  5'- --aGCGCGUCGCUCUCCGccgcggcGUGGUCc- -3'
miRNA:   3'- uccCGUGCAGCGGGAGGU-------CGCCAGac -5'
23607 3' -62 NC_005261.1 + 86300 0.94 0.008926
Target:  5'- cAGGGCACGUCGCCCUCCAGCGuG-CUGg -3'
miRNA:   3'- -UCCCGUGCAGCGGGAGGUCGC-CaGAC- -5'
23607 3' -62 NC_005261.1 + 90209 0.69 0.443537
Target:  5'- gGGGGCgGCGgagCGCCCUCgcgCGGCGGg--- -3'
miRNA:   3'- -UCCCG-UGCa--GCGGGAG---GUCGCCagac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.