Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23607 | 3' | -62 | NC_005261.1 | + | 93479 | 0.67 | 0.545511 |
Target: 5'- gGGGcGCGCGUCGCCCg-CGGCGa---- -3' miRNA: 3'- -UCC-CGUGCAGCGGGagGUCGCcagac -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 109341 | 0.67 | 0.545511 |
Target: 5'- cGGGGUcggcggccGCGUCGCCgUCCAGCcGcUCg- -3' miRNA: 3'- -UCCCG--------UGCAGCGGgAGGUCGcC-AGac -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 81678 | 0.67 | 0.554231 |
Target: 5'- uGGGGCACGacugcCGCCCgUCCGGgcccggcgccguuCGGUCc- -3' miRNA: 3'- -UCCCGUGCa----GCGGG-AGGUC-------------GCCAGac -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 28269 | 0.67 | 0.555203 |
Target: 5'- gGGGGCGCuGUUGCCgCcgCCGcggccGCGGUCg- -3' miRNA: 3'- -UCCCGUG-CAGCGG-Ga-GGU-----CGCCAGac -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 116195 | 0.67 | 0.564945 |
Target: 5'- uGGGCGCGUCGCCgcagaagcgCUCCAggaGCGuGUa-- -3' miRNA: 3'- uCCCGUGCAGCGG---------GAGGU---CGC-CAgac -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 33111 | 0.68 | 0.488685 |
Target: 5'- cGGGCAC-UCGCCCUCC-GCGa---- -3' miRNA: 3'- uCCCGUGcAGCGGGAGGuCGCcagac -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 16293 | 0.68 | 0.497975 |
Target: 5'- gGGGGCGcCGUCggGCCCagCGGCGGcCg- -3' miRNA: 3'- -UCCCGU-GCAG--CGGGagGUCGCCaGac -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 63026 | 0.68 | 0.497975 |
Target: 5'- cGGGCGCcggCGCCCgcggCgaGGCGGUCg- -3' miRNA: 3'- uCCCGUGca-GCGGGa---Gg-UCGCCAGac -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 119655 | 0.68 | 0.497975 |
Target: 5'- cGGcGGCGCG-CGCCUggagcucugguUCCAGCGcGUCg- -3' miRNA: 3'- -UC-CCGUGCaGCGGG-----------AGGUCGC-CAGac -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 93542 | 0.68 | 0.507343 |
Target: 5'- cGcGCGCGcCGCCCagUAGCGGUCg- -3' miRNA: 3'- uCcCGUGCaGCGGGagGUCGCCAGac -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 17547 | 0.68 | 0.516785 |
Target: 5'- gGGcGGCGCGggccCGCCgUUCGGCGGUg-- -3' miRNA: 3'- -UC-CCGUGCa---GCGGgAGGUCGCCAgac -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 34937 | 0.68 | 0.516785 |
Target: 5'- gGGGGCGgcCGgcgCGaCCCgggcCCGGCGGcCUGg -3' miRNA: 3'- -UCCCGU--GCa--GC-GGGa---GGUCGCCaGAC- -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 31323 | 0.69 | 0.43479 |
Target: 5'- cGGGCGCGcUCGCCg-CCAGCGcGccgCUGc -3' miRNA: 3'- uCCCGUGC-AGCGGgaGGUCGC-Ca--GAC- -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 43849 | 0.69 | 0.43479 |
Target: 5'- gAGGGCgaggacgcggccGCGUCGUCCUC-GGCGGcgcggCUGa -3' miRNA: 3'- -UCCCG------------UGCAGCGGGAGgUCGCCa----GAC- -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 43809 | 0.69 | 0.443537 |
Target: 5'- gGGGGCGcCGggcgCGCCCUCC-GUGGagaagCUGc -3' miRNA: 3'- -UCCCGU-GCa---GCGGGAGGuCGCCa----GAC- -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 90209 | 0.69 | 0.443537 |
Target: 5'- gGGGGCgGCGgagCGCCCUCgcgCGGCGGg--- -3' miRNA: 3'- -UCCCG-UGCa--GCGGGAG---GUCGCCagac -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 33866 | 0.69 | 0.461322 |
Target: 5'- gAGGGCccccCGcCGCCCgccUCCGGCGcGUCa- -3' miRNA: 3'- -UCCCGu---GCaGCGGG---AGGUCGC-CAGac -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 18731 | 0.69 | 0.461322 |
Target: 5'- cGGGCGCGgggCGCCCcaaaaCAGCGGcCc- -3' miRNA: 3'- uCCCGUGCa--GCGGGag---GUCGCCaGac -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 40726 | 0.69 | 0.461322 |
Target: 5'- gGGGGCGCGUgggcguaGCCCaUCAGCguguaugugucGGUCUGc -3' miRNA: 3'- -UCCCGUGCAg------CGGGaGGUCG-----------CCAGAC- -5' |
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23607 | 3' | -62 | NC_005261.1 | + | 13071 | 0.69 | 0.426143 |
Target: 5'- cGGGCGCGUCcgccgGCCCgUCGGCGGg--- -3' miRNA: 3'- uCCCGUGCAG-----CGGGaGGUCGCCagac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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