miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23607 5' -56.3 NC_005261.1 + 107611 0.68 0.762326
Target:  5'- -gCAGCgggcacaGCGUCCGUGcgCGggaacucgaGCGCCCg -3'
miRNA:   3'- aaGUCG-------CGCAGGUACa-GCaa-------CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 98941 0.68 0.753636
Target:  5'- -gCAGCGCGUCCucguaGUCGa-GCGUCa -3'
miRNA:   3'- aaGUCGCGCAGGua---CAGCaaCGCGGg -5'
23607 5' -56.3 NC_005261.1 + 103329 0.68 0.753636
Target:  5'- -gCAGCGCGUCCAg------GCGCCg -3'
miRNA:   3'- aaGUCGCGCAGGUacagcaaCGCGGg -5'
23607 5' -56.3 NC_005261.1 + 106550 0.68 0.753636
Target:  5'- -gCGGcCGCGUCCggGcCGgcGCGCgCCg -3'
miRNA:   3'- aaGUC-GCGCAGGuaCaGCaaCGCG-GG- -5'
23607 5' -56.3 NC_005261.1 + 84974 0.68 0.753636
Target:  5'- --gGGCGCGUCCg---CGaUGCGCCg -3'
miRNA:   3'- aagUCGCGCAGGuacaGCaACGCGGg -5'
23607 5' -56.3 NC_005261.1 + 99233 0.68 0.753636
Target:  5'- --aGGCGCGUCg--G-CGUcGCGCCCg -3'
miRNA:   3'- aagUCGCGCAGguaCaGCAaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 128779 0.68 0.753636
Target:  5'- -aCuGCGCG-CCGuUGUCuggGCGCCCg -3'
miRNA:   3'- aaGuCGCGCaGGU-ACAGcaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 68246 0.68 0.751693
Target:  5'- --gGGCGUGUUCGUGgacugccuggcgCGccUGCGCCCg -3'
miRNA:   3'- aagUCGCGCAGGUACa-----------GCa-ACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 62433 0.68 0.743878
Target:  5'- -cCAGCGCGagCcgGUCGccGgGCCCc -3'
miRNA:   3'- aaGUCGCGCagGuaCAGCaaCgCGGG- -5'
23607 5' -56.3 NC_005261.1 + 65791 0.68 0.743878
Target:  5'- -gCGGCGgGaacaUCCGcggGUCGggGUGCCCg -3'
miRNA:   3'- aaGUCGCgC----AGGUa--CAGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 98291 0.69 0.734019
Target:  5'- -cCGGCGCGUCCGcgGccUCGggggcggGCGCCg -3'
miRNA:   3'- aaGUCGCGCAGGUa-C--AGCaa-----CGCGGg -5'
23607 5' -56.3 NC_005261.1 + 115097 0.69 0.731043
Target:  5'- aUCAGCGUGUCgGccUCGgcggcgcugcccacgGCGCCCa -3'
miRNA:   3'- aAGUCGCGCAGgUacAGCaa-------------CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 35018 0.69 0.71404
Target:  5'- -gCGGCcgGCGUCUcgGUCGcugGCGCgCCg -3'
miRNA:   3'- aaGUCG--CGCAGGuaCAGCaa-CGCG-GG- -5'
23607 5' -56.3 NC_005261.1 + 131817 0.69 0.71404
Target:  5'- -aCGGCGCGccgCCGcuUGaCGcgGCGCCCg -3'
miRNA:   3'- aaGUCGCGCa--GGU--ACaGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 72695 0.69 0.712025
Target:  5'- -cCGGCGCG-CCAgguccgccagCGUcGCGCCCg -3'
miRNA:   3'- aaGUCGCGCaGGUaca-------GCAaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 103792 0.69 0.703938
Target:  5'- --gGGC-CGUCUucgGUGUgcgcCGUUGCGCCCg -3'
miRNA:   3'- aagUCGcGCAGG---UACA----GCAACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 86090 0.69 0.693775
Target:  5'- cUCcGCGCGUUC---UCGUcgGCGCCCg -3'
miRNA:   3'- aAGuCGCGCAGGuacAGCAa-CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 108268 0.69 0.68356
Target:  5'- -cCAGCGUcuccacggccugGUCCGg--CGUUGCGCUCg -3'
miRNA:   3'- aaGUCGCG------------CAGGUacaGCAACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 100957 0.7 0.663007
Target:  5'- -aCGGCGCGcgCgGUcUCGUggaagGCGCCCa -3'
miRNA:   3'- aaGUCGCGCa-GgUAcAGCAa----CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 87486 0.7 0.652689
Target:  5'- gUUCGGCGCGgCCGUGcuggCGcgcagGCGCUCg -3'
miRNA:   3'- -AAGUCGCGCaGGUACa---GCaa---CGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.