miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23607 5' -56.3 NC_005261.1 + 46262 0.66 0.843684
Target:  5'- -gCGGcCGCGaCCGUGUCcccGggGCGCUCu -3'
miRNA:   3'- aaGUC-GCGCaGGUACAG---CaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 2133 0.66 0.843684
Target:  5'- --gAGCGCGcUCAcGUcCGgcGCGCCCg -3'
miRNA:   3'- aagUCGCGCaGGUaCA-GCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 58207 0.66 0.843684
Target:  5'- gUCAGCGCGcgcgCCAg--CagcGCGCCCg -3'
miRNA:   3'- aAGUCGCGCa---GGUacaGcaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 118791 0.66 0.843684
Target:  5'- -aCGGCGCGcugauggcgCaCGUGggCGUcUGCGCCCu -3'
miRNA:   3'- aaGUCGCGCa--------G-GUACa-GCA-ACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 50552 0.66 0.843684
Target:  5'- aUCGGCGCGcggaCCAcgGUCac-GCGCCUg -3'
miRNA:   3'- aAGUCGCGCa---GGUa-CAGcaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 72409 0.67 0.83543
Target:  5'- ---cGCGCGUCCccGcCcUUGCGCUCg -3'
miRNA:   3'- aaguCGCGCAGGuaCaGcAACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 64012 0.67 0.83543
Target:  5'- aUCAGCGCGUaggugagCGUGuucUCGUcggcgcggcucUGCGCCg -3'
miRNA:   3'- aAGUCGCGCAg------GUAC---AGCA-----------ACGCGGg -5'
23607 5' -56.3 NC_005261.1 + 20585 0.67 0.83543
Target:  5'- -gCGGCGCGgguggCCuacGUCGacacaGCGCCCc -3'
miRNA:   3'- aaGUCGCGCa----GGua-CAGCaa---CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 45375 0.67 0.825275
Target:  5'- --gAGCGCGUcggggCCGcccuguucgugcagcUGUCGUgccugcugcggcgccUGCGCCCg -3'
miRNA:   3'- aagUCGCGCA-----GGU---------------ACAGCA---------------ACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 132694 0.67 0.818361
Target:  5'- cUUCcGCGUGgCCGUGccCGUcccgGCGCCCu -3'
miRNA:   3'- -AAGuCGCGCaGGUACa-GCAa---CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 103053 0.67 0.818361
Target:  5'- -cCAGCGCcuGUCCcgG-CacgGCGCCCa -3'
miRNA:   3'- aaGUCGCG--CAGGuaCaGcaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 102864 0.67 0.813103
Target:  5'- -gCAGCGCGUCCAggaaggcgaacucgGgCGggagccccGCGCCCc -3'
miRNA:   3'- aaGUCGCGCAGGUa-------------CaGCaa------CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 31858 0.67 0.809563
Target:  5'- -gCGGCGCGUCU---UCGggcccgGCGCCUu -3'
miRNA:   3'- aaGUCGCGCAGGuacAGCaa----CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 84407 0.67 0.800601
Target:  5'- -cCAGCucGCGcagCAUGUCGgccGCGCCCu -3'
miRNA:   3'- aaGUCG--CGCag-GUACAGCaa-CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 131197 0.68 0.791483
Target:  5'- -gCGGCGCGgucgCCGc--CGgcGCGCCCg -3'
miRNA:   3'- aaGUCGCGCa---GGUacaGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 86594 0.68 0.791483
Target:  5'- -gCGGCGcCGUCCuuggcGUCGgccGCGCCg -3'
miRNA:   3'- aaGUCGC-GCAGGua---CAGCaa-CGCGGg -5'
23607 5' -56.3 NC_005261.1 + 119137 0.68 0.791483
Target:  5'- -gCGGCGCGgCCAUcUCGgaucCGCCCg -3'
miRNA:   3'- aaGUCGCGCaGGUAcAGCaac-GCGGG- -5'
23607 5' -56.3 NC_005261.1 + 101577 0.68 0.782219
Target:  5'- cUCGGCGCGcgCCGUGgccucCGcgcGCGCCg -3'
miRNA:   3'- aAGUCGCGCa-GGUACa----GCaa-CGCGGg -5'
23607 5' -56.3 NC_005261.1 + 99816 0.68 0.782219
Target:  5'- -aCAGCGCGccgUCCGccggGUCGUc-CGCCCc -3'
miRNA:   3'- aaGUCGCGC---AGGUa---CAGCAacGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 93891 0.68 0.772816
Target:  5'- -gCAGCGCGgucgCCAgcgacUGcgggCGcgGCGCCCg -3'
miRNA:   3'- aaGUCGCGCa---GGU-----ACa---GCaaCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.