Results 21 - 40 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23607 | 5' | -56.3 | NC_005261.1 | + | 73451 | 0.71 | 0.61133 |
Target: 5'- -cCGGcCGCGUCCGcGUCcgcGCGCCCc -3' miRNA: 3'- aaGUC-GCGCAGGUaCAGcaaCGCGGG- -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 103476 | 0.71 | 0.61753 |
Target: 5'- -cCAGgGCGUCCAgcuggcgcaagacGUCGUcgGCGCCg -3' miRNA: 3'- aaGUCgCGCAGGUa------------CAGCAa-CGCGGg -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 87486 | 0.7 | 0.652689 |
Target: 5'- gUUCGGCGCGgCCGUGcuggCGcgcagGCGCUCg -3' miRNA: 3'- -AAGUCGCGCaGGUACa---GCaa---CGCGGG- -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 100957 | 0.7 | 0.663007 |
Target: 5'- -aCGGCGCGcgCgGUcUCGUggaagGCGCCCa -3' miRNA: 3'- aaGUCGCGCa-GgUAcAGCAa----CGCGGG- -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 108268 | 0.69 | 0.68356 |
Target: 5'- -cCAGCGUcuccacggccugGUCCGg--CGUUGCGCUCg -3' miRNA: 3'- aaGUCGCG------------CAGGUacaGCAACGCGGG- -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 86090 | 0.69 | 0.693775 |
Target: 5'- cUCcGCGCGUUC---UCGUcgGCGCCCg -3' miRNA: 3'- aAGuCGCGCAGGuacAGCAa-CGCGGG- -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 103792 | 0.69 | 0.703938 |
Target: 5'- --gGGC-CGUCUucgGUGUgcgcCGUUGCGCCCg -3' miRNA: 3'- aagUCGcGCAGG---UACA----GCAACGCGGG- -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 72695 | 0.69 | 0.712025 |
Target: 5'- -cCGGCGCG-CCAgguccgccagCGUcGCGCCCg -3' miRNA: 3'- aaGUCGCGCaGGUaca-------GCAaCGCGGG- -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 35018 | 0.69 | 0.71404 |
Target: 5'- -gCGGCcgGCGUCUcgGUCGcugGCGCgCCg -3' miRNA: 3'- aaGUCG--CGCAGGuaCAGCaa-CGCG-GG- -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 131817 | 0.69 | 0.71404 |
Target: 5'- -aCGGCGCGccgCCGcuUGaCGcgGCGCCCg -3' miRNA: 3'- aaGUCGCGCa--GGU--ACaGCaaCGCGGG- -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 115097 | 0.69 | 0.731043 |
Target: 5'- aUCAGCGUGUCgGccUCGgcggcgcugcccacgGCGCCCa -3' miRNA: 3'- aAGUCGCGCAGgUacAGCaa-------------CGCGGG- -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 98291 | 0.69 | 0.734019 |
Target: 5'- -cCGGCGCGUCCGcgGccUCGggggcggGCGCCg -3' miRNA: 3'- aaGUCGCGCAGGUa-C--AGCaa-----CGCGGg -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 65791 | 0.68 | 0.743878 |
Target: 5'- -gCGGCGgGaacaUCCGcggGUCGggGUGCCCg -3' miRNA: 3'- aaGUCGCgC----AGGUa--CAGCaaCGCGGG- -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 62433 | 0.68 | 0.743878 |
Target: 5'- -cCAGCGCGagCcgGUCGccGgGCCCc -3' miRNA: 3'- aaGUCGCGCagGuaCAGCaaCgCGGG- -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 68246 | 0.68 | 0.751693 |
Target: 5'- --gGGCGUGUUCGUGgacugccuggcgCGccUGCGCCCg -3' miRNA: 3'- aagUCGCGCAGGUACa-----------GCa-ACGCGGG- -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 99233 | 0.68 | 0.753636 |
Target: 5'- --aGGCGCGUCg--G-CGUcGCGCCCg -3' miRNA: 3'- aagUCGCGCAGguaCaGCAaCGCGGG- -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 103329 | 0.68 | 0.753636 |
Target: 5'- -gCAGCGCGUCCAg------GCGCCg -3' miRNA: 3'- aaGUCGCGCAGGUacagcaaCGCGGg -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 84974 | 0.68 | 0.753636 |
Target: 5'- --gGGCGCGUCCg---CGaUGCGCCg -3' miRNA: 3'- aagUCGCGCAGGuacaGCaACGCGGg -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 106550 | 0.68 | 0.753636 |
Target: 5'- -gCGGcCGCGUCCggGcCGgcGCGCgCCg -3' miRNA: 3'- aaGUC-GCGCAGGuaCaGCaaCGCG-GG- -5' |
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23607 | 5' | -56.3 | NC_005261.1 | + | 98941 | 0.68 | 0.753636 |
Target: 5'- -gCAGCGCGUCCucguaGUCGa-GCGUCa -3' miRNA: 3'- aaGUCGCGCAGGua---CAGCaaCGCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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