miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23607 5' -56.3 NC_005261.1 + 86335 1.1 0.001942
Target:  5'- cUUCAGCGCGUCCAUGUCGUUGCGCCCg -3'
miRNA:   3'- -AAGUCGCGCAGGUACAGCAACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 1661 0.84 0.114244
Target:  5'- cUCuGCGCGgCCAUGUCcUUGCGCCCg -3'
miRNA:   3'- aAGuCGCGCaGGUACAGcAACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 82586 0.78 0.257955
Target:  5'- -gCAGCGCGUCC---UCGUUGCGCUg -3'
miRNA:   3'- aaGUCGCGCAGGuacAGCAACGCGGg -5'
23607 5' -56.3 NC_005261.1 + 73023 0.74 0.416378
Target:  5'- -cCAGCGCGUCCcagccGUCGcgccacGCGCCCc -3'
miRNA:   3'- aaGUCGCGCAGGua---CAGCaa----CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 59146 0.74 0.425273
Target:  5'- -cCGGCGCGcCCcgGgcgCGcgGCGCCCg -3'
miRNA:   3'- aaGUCGCGCaGGuaCa--GCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 99542 0.73 0.461947
Target:  5'- --gGGCGCGUCCAgg-CGgcGCGCCa -3'
miRNA:   3'- aagUCGCGCAGGUacaGCaaCGCGGg -5'
23607 5' -56.3 NC_005261.1 + 86712 0.73 0.469481
Target:  5'- -cCAGCGCGUCCAgcuucgccgccUCGUccgccGCGCCCu -3'
miRNA:   3'- aaGUCGCGCAGGUac---------AGCAa----CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 84239 0.73 0.471375
Target:  5'- -aCAGCuCGUCCAgGUCGggGCGCUUg -3'
miRNA:   3'- aaGUCGcGCAGGUaCAGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 81151 0.73 0.480899
Target:  5'- --uGGCGCcaaugcccUCCGUGUaGUUGCGCCCg -3'
miRNA:   3'- aagUCGCGc-------AGGUACAgCAACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 83756 0.73 0.490516
Target:  5'- -gCGGCGCGccacggCCggGUCGcaGCGCCCg -3'
miRNA:   3'- aaGUCGCGCa-----GGuaCAGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 104998 0.72 0.52982
Target:  5'- -cCAGCGCGggCGgcgGUCGggGCGCCa -3'
miRNA:   3'- aaGUCGCGCagGUa--CAGCaaCGCGGg -5'
23607 5' -56.3 NC_005261.1 + 47122 0.72 0.539832
Target:  5'- -aCGuGCGCGUCCAgGUCGUcGCGCa- -3'
miRNA:   3'- aaGU-CGCGCAGGUaCAGCAaCGCGgg -5'
23607 5' -56.3 NC_005261.1 + 94154 0.72 0.549906
Target:  5'- gUCAGCGC--CCggGUCGcgaagGCGCCCa -3'
miRNA:   3'- aAGUCGCGcaGGuaCAGCaa---CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 29989 0.72 0.560038
Target:  5'- -cCGGCGCGUCCGgcagCGgcGCGUCUg -3'
miRNA:   3'- aaGUCGCGCAGGUaca-GCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 76418 0.71 0.567161
Target:  5'- -cCGGCGCGUgcagagcgccggcgCCAUGgCGgacGCGCCCg -3'
miRNA:   3'- aaGUCGCGCA--------------GGUACaGCaa-CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 72999 0.71 0.570221
Target:  5'- -cCAGCGCGUCCGcGUC----CGCCCa -3'
miRNA:   3'- aaGUCGCGCAGGUaCAGcaacGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 4575 0.71 0.570221
Target:  5'- --gGGCGgGUCCGg--CGggGCGCCCc -3'
miRNA:   3'- aagUCGCgCAGGUacaGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 96992 0.71 0.580448
Target:  5'- cUCGGCGCGgcuaagcgcgCCAUugggcgggccGUCGggcGCGCCCg -3'
miRNA:   3'- aAGUCGCGCa---------GGUA----------CAGCaa-CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 68423 0.71 0.590714
Target:  5'- -gCGGCGCGUCCugcaccUGuUCGacGUGCCCa -3'
miRNA:   3'- aaGUCGCGCAGGu-----AC-AGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 55624 0.71 0.60101
Target:  5'- -gCAGCGCGUCCuccgcGUCGUcaaacGCGCgCa -3'
miRNA:   3'- aaGUCGCGCAGGua---CAGCAa----CGCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.