miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23607 5' -56.3 NC_005261.1 + 1661 0.84 0.114244
Target:  5'- cUCuGCGCGgCCAUGUCcUUGCGCCCg -3'
miRNA:   3'- aAGuCGCGCaGGUACAGcAACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 2133 0.66 0.843684
Target:  5'- --gAGCGCGcUCAcGUcCGgcGCGCCCg -3'
miRNA:   3'- aagUCGCGCaGGUaCA-GCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 4050 0.66 0.881881
Target:  5'- -aCAGCGCGUUC-UGcgCGgccaugGCGUCCc -3'
miRNA:   3'- aaGUCGCGCAGGuACa-GCaa----CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 4499 0.66 0.851743
Target:  5'- -cCuGCGCGggccCCA-GUCGc-GCGCCCg -3'
miRNA:   3'- aaGuCGCGCa---GGUaCAGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 4575 0.71 0.570221
Target:  5'- --gGGCGgGUCCGg--CGggGCGCCCc -3'
miRNA:   3'- aagUCGCgCAGGUacaGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 17001 0.66 0.851743
Target:  5'- aUCAGCGCcagCAUGUCGcacGCGgCCg -3'
miRNA:   3'- aAGUCGCGcagGUACAGCaa-CGCgGG- -5'
23607 5' -56.3 NC_005261.1 + 20585 0.67 0.83543
Target:  5'- -gCGGCGCGgguggCCuacGUCGacacaGCGCCCc -3'
miRNA:   3'- aaGUCGCGCa----GGua-CAGCaa---CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 29989 0.72 0.560038
Target:  5'- -cCGGCGCGUCCGgcagCGgcGCGUCUg -3'
miRNA:   3'- aaGUCGCGCAGGUaca-GCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 31858 0.67 0.809563
Target:  5'- -gCGGCGCGUCU---UCGggcccgGCGCCUu -3'
miRNA:   3'- aaGUCGCGCAGGuacAGCaa----CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 34681 0.66 0.874673
Target:  5'- -gCAGCGCGcUgCGUGaCGgUGgGCCCc -3'
miRNA:   3'- aaGUCGCGC-AgGUACaGCaACgCGGG- -5'
23607 5' -56.3 NC_005261.1 + 35018 0.69 0.71404
Target:  5'- -gCGGCcgGCGUCUcgGUCGcugGCGCgCCg -3'
miRNA:   3'- aaGUCG--CGCAGGuaCAGCaa-CGCG-GG- -5'
23607 5' -56.3 NC_005261.1 + 40747 0.66 0.851743
Target:  5'- aUCAGCGUGUaUGUGUCGgucugcaGUGCCa -3'
miRNA:   3'- aAGUCGCGCAgGUACAGCaa-----CGCGGg -5'
23607 5' -56.3 NC_005261.1 + 45375 0.67 0.825275
Target:  5'- --gAGCGCGUcggggCCGcccuguucgugcagcUGUCGUgccugcugcggcgccUGCGCCCg -3'
miRNA:   3'- aagUCGCGCA-----GGU---------------ACAGCA---------------ACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 46262 0.66 0.843684
Target:  5'- -gCGGcCGCGaCCGUGUCcccGggGCGCUCu -3'
miRNA:   3'- aaGUC-GCGCaGGUACAG---CaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 47122 0.72 0.539832
Target:  5'- -aCGuGCGCGUCCAgGUCGUcGCGCa- -3'
miRNA:   3'- aaGU-CGCGCAGGUaCAGCAaCGCGgg -5'
23607 5' -56.3 NC_005261.1 + 50552 0.66 0.843684
Target:  5'- aUCGGCGCGcggaCCAcgGUCac-GCGCCUg -3'
miRNA:   3'- aAGUCGCGCa---GGUa-CAGcaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 53255 0.66 0.846932
Target:  5'- ---cGCGCGUCCcggucgcagaccagcAUGUCGauggagGCGCCa -3'
miRNA:   3'- aaguCGCGCAGG---------------UACAGCaa----CGCGGg -5'
23607 5' -56.3 NC_005261.1 + 55624 0.71 0.60101
Target:  5'- -gCAGCGCGUCCuccgcGUCGUcaaacGCGCgCa -3'
miRNA:   3'- aaGUCGCGCAGGua---CAGCAa----CGCGgG- -5'
23607 5' -56.3 NC_005261.1 + 57400 0.66 0.859598
Target:  5'- --gAGCGCGcCCGUGauccgCGgccgGCGCCg -3'
miRNA:   3'- aagUCGCGCaGGUACa----GCaa--CGCGGg -5'
23607 5' -56.3 NC_005261.1 + 58207 0.66 0.843684
Target:  5'- gUCAGCGCGcgcgCCAg--CagcGCGCCCg -3'
miRNA:   3'- aAGUCGCGCa---GGUacaGcaaCGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.