miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23607 5' -56.3 NC_005261.1 + 133716 0.66 0.867244
Target:  5'- -cCGGCGcCGUCUAcGUCGggGCGgCg -3'
miRNA:   3'- aaGUCGC-GCAGGUaCAGCaaCGCgGg -5'
23607 5' -56.3 NC_005261.1 + 132694 0.67 0.818361
Target:  5'- cUUCcGCGUGgCCGUGccCGUcccgGCGCCCu -3'
miRNA:   3'- -AAGuCGCGCaGGUACa-GCAa---CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 131817 0.69 0.71404
Target:  5'- -aCGGCGCGccgCCGcuUGaCGcgGCGCCCg -3'
miRNA:   3'- aaGUCGCGCa--GGU--ACaGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 131197 0.68 0.791483
Target:  5'- -gCGGCGCGgucgCCGc--CGgcGCGCCCg -3'
miRNA:   3'- aaGUCGCGCa---GGUacaGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 128779 0.68 0.753636
Target:  5'- -aCuGCGCG-CCGuUGUCuggGCGCCCg -3'
miRNA:   3'- aaGuCGCGCaGGU-ACAGcaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 124616 0.66 0.851743
Target:  5'- -aUAGCGCGUCCAg--CGgcaucUGCGCg- -3'
miRNA:   3'- aaGUCGCGCAGGUacaGCa----ACGCGgg -5'
23607 5' -56.3 NC_005261.1 + 119137 0.68 0.791483
Target:  5'- -gCGGCGCGgCCAUcUCGgaucCGCCCg -3'
miRNA:   3'- aaGUCGCGCaGGUAcAGCaac-GCGGG- -5'
23607 5' -56.3 NC_005261.1 + 118791 0.66 0.843684
Target:  5'- -aCGGCGCGcugauggcgCaCGUGggCGUcUGCGCCCu -3'
miRNA:   3'- aaGUCGCGCa--------G-GUACa-GCA-ACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 115097 0.69 0.731043
Target:  5'- aUCAGCGUGUCgGccUCGgcggcgcugcccacgGCGCCCa -3'
miRNA:   3'- aAGUCGCGCAGgUacAGCaa-------------CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 110223 0.66 0.859598
Target:  5'- cUCGGCGaCGccUCCAgcgUGggcggCGcgGCGCCCg -3'
miRNA:   3'- aAGUCGC-GC--AGGU---ACa----GCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 108268 0.69 0.68356
Target:  5'- -cCAGCGUcuccacggccugGUCCGg--CGUUGCGCUCg -3'
miRNA:   3'- aaGUCGCG------------CAGGUacaGCAACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 108219 0.66 0.874673
Target:  5'- -aCGGCGCGcUCCAgcaUGgCGcacGUGCCCg -3'
miRNA:   3'- aaGUCGCGC-AGGU---ACaGCaa-CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 107611 0.68 0.762326
Target:  5'- -gCAGCgggcacaGCGUCCGUGcgCGggaacucgaGCGCCCg -3'
miRNA:   3'- aaGUCG-------CGCAGGUACa-GCaa-------CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 106664 0.66 0.859598
Target:  5'- -cCGGCGCGgucgUCCAg--CGc-GCGCCCg -3'
miRNA:   3'- aaGUCGCGC----AGGUacaGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 106550 0.68 0.753636
Target:  5'- -gCGGcCGCGUCCggGcCGgcGCGCgCCg -3'
miRNA:   3'- aaGUC-GCGCAGGuaCaGCaaCGCG-GG- -5'
23607 5' -56.3 NC_005261.1 + 104998 0.72 0.52982
Target:  5'- -cCAGCGCGggCGgcgGUCGggGCGCCa -3'
miRNA:   3'- aaGUCGCGCagGUa--CAGCaaCGCGGg -5'
23607 5' -56.3 NC_005261.1 + 104879 0.66 0.874673
Target:  5'- gUCAGCGuCGaucgCCGccgCG-UGCGCCCg -3'
miRNA:   3'- aAGUCGC-GCa---GGUacaGCaACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 104073 0.66 0.864973
Target:  5'- --gAGCGCGUCCAgcUCGgcggacagggcggcgGCGCuCCg -3'
miRNA:   3'- aagUCGCGCAGGUacAGCaa-------------CGCG-GG- -5'
23607 5' -56.3 NC_005261.1 + 103792 0.69 0.703938
Target:  5'- --gGGC-CGUCUucgGUGUgcgcCGUUGCGCCCg -3'
miRNA:   3'- aagUCGcGCAGG---UACA----GCAACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 103476 0.71 0.61753
Target:  5'- -cCAGgGCGUCCAgcuggcgcaagacGUCGUcgGCGCCg -3'
miRNA:   3'- aaGUCgCGCAGGUa------------CAGCAa-CGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.