miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23607 5' -56.3 NC_005261.1 + 59146 0.74 0.425273
Target:  5'- -cCGGCGCGcCCcgGgcgCGcgGCGCCCg -3'
miRNA:   3'- aaGUCGCGCaGGuaCa--GCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 62219 0.66 0.881881
Target:  5'- ---cGCGCGgCCGcGUC--UGCGCCCu -3'
miRNA:   3'- aaguCGCGCaGGUaCAGcaACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 62433 0.68 0.743878
Target:  5'- -cCAGCGCGagCcgGUCGccGgGCCCc -3'
miRNA:   3'- aaGUCGCGCagGuaCAGCaaCgCGGG- -5'
23607 5' -56.3 NC_005261.1 + 64012 0.67 0.83543
Target:  5'- aUCAGCGCGUaggugagCGUGuucUCGUcggcgcggcucUGCGCCg -3'
miRNA:   3'- aAGUCGCGCAg------GUAC---AGCA-----------ACGCGGg -5'
23607 5' -56.3 NC_005261.1 + 65791 0.68 0.743878
Target:  5'- -gCGGCGgGaacaUCCGcggGUCGggGUGCCCg -3'
miRNA:   3'- aaGUCGCgC----AGGUa--CAGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 68246 0.68 0.751693
Target:  5'- --gGGCGUGUUCGUGgacugccuggcgCGccUGCGCCCg -3'
miRNA:   3'- aagUCGCGCAGGUACa-----------GCa-ACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 68423 0.71 0.590714
Target:  5'- -gCGGCGCGUCCugcaccUGuUCGacGUGCCCa -3'
miRNA:   3'- aaGUCGCGCAGGu-----AC-AGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 72409 0.67 0.83543
Target:  5'- ---cGCGCGUCCccGcCcUUGCGCUCg -3'
miRNA:   3'- aaguCGCGCAGGuaCaGcAACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 72695 0.69 0.712025
Target:  5'- -cCGGCGCG-CCAgguccgccagCGUcGCGCCCg -3'
miRNA:   3'- aaGUCGCGCaGGUaca-------GCAaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 72999 0.71 0.570221
Target:  5'- -cCAGCGCGUCCGcGUC----CGCCCa -3'
miRNA:   3'- aaGUCGCGCAGGUaCAGcaacGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 73023 0.74 0.416378
Target:  5'- -cCAGCGCGUCCcagccGUCGcgccacGCGCCCc -3'
miRNA:   3'- aaGUCGCGCAGGua---CAGCaa----CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 73451 0.71 0.61133
Target:  5'- -cCGGcCGCGUCCGcGUCcgcGCGCCCc -3'
miRNA:   3'- aaGUC-GCGCAGGUaCAGcaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 76418 0.71 0.567161
Target:  5'- -cCGGCGCGUgcagagcgccggcgCCAUGgCGgacGCGCCCg -3'
miRNA:   3'- aaGUCGCGCA--------------GGUACaGCaa-CGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 81151 0.73 0.480899
Target:  5'- --uGGCGCcaaugcccUCCGUGUaGUUGCGCCCg -3'
miRNA:   3'- aagUCGCGc-------AGGUACAgCAACGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 81297 0.66 0.867244
Target:  5'- -gCGGCGCGcacgUCCGUGcCGUUGUcggggucgucGCCg -3'
miRNA:   3'- aaGUCGCGC----AGGUACaGCAACG----------CGGg -5'
23607 5' -56.3 NC_005261.1 + 82051 0.66 0.874673
Target:  5'- gUCAGCGCGggccacgucgCCggGUCGacgGCGUgCCg -3'
miRNA:   3'- aAGUCGCGCa---------GGuaCAGCaa-CGCG-GG- -5'
23607 5' -56.3 NC_005261.1 + 82586 0.78 0.257955
Target:  5'- -gCAGCGCGUCC---UCGUUGCGCUg -3'
miRNA:   3'- aaGUCGCGCAGGuacAGCAACGCGGg -5'
23607 5' -56.3 NC_005261.1 + 83756 0.73 0.490516
Target:  5'- -gCGGCGCGccacggCCggGUCGcaGCGCCCg -3'
miRNA:   3'- aaGUCGCGCa-----GGuaCAGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 84239 0.73 0.471375
Target:  5'- -aCAGCuCGUCCAgGUCGggGCGCUUg -3'
miRNA:   3'- aaGUCGcGCAGGUaCAGCaaCGCGGG- -5'
23607 5' -56.3 NC_005261.1 + 84407 0.67 0.800601
Target:  5'- -cCAGCucGCGcagCAUGUCGgccGCGCCCu -3'
miRNA:   3'- aaGUCG--CGCag-GUACAGCaa-CGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.