miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 3' -59.7 NC_005261.1 + 69760 0.67 0.640946
Target:  5'- gAGCGCgggGGGCggcgccgGGGACUgagccgcucccgcgGCGCGCGGc -3'
miRNA:   3'- gUCGUG---CCCGa------CCUUGA--------------CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 128748 0.67 0.633792
Target:  5'- uCGGCAucgucgacuCGGGCUaccagGGAaaACUGCGCGCc-- -3'
miRNA:   3'- -GUCGU---------GCCCGA-----CCU--UGACGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 19061 0.67 0.633792
Target:  5'- gGGUACGGGCUGcGcGGCUcucgGCGCGUGc- -3'
miRNA:   3'- gUCGUGCCCGAC-C-UUGA----CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 15940 0.67 0.623572
Target:  5'- gGGCcCGGGCaGGAGCcGgGgGCGAGu -3'
miRNA:   3'- gUCGuGCCCGaCCUUGaCgCgCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 14456 0.67 0.623572
Target:  5'- gGGCGCGcGGC-GGAGCU-CGCGCu-- -3'
miRNA:   3'- gUCGUGC-CCGaCCUUGAcGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 105908 0.67 0.623572
Target:  5'- gGGCGCGGGCc---GCUcGCGCGCGc- -3'
miRNA:   3'- gUCGUGCCCGaccuUGA-CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 112664 0.67 0.623572
Target:  5'- gAGUACGagcGGCUGGAgcgcgagggGCUGgGCGuCGAGg -3'
miRNA:   3'- gUCGUGC---CCGACCU---------UGACgCGC-GCUU- -5'
23609 3' -59.7 NC_005261.1 + 43115 0.67 0.621528
Target:  5'- uGGCGCGGGaUUGGcGCgccuacacacgcGCGCGCGGc -3'
miRNA:   3'- gUCGUGCCC-GACCuUGa-----------CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 102959 0.67 0.612337
Target:  5'- gCGGcCGCGGGCgccgcGGGcuccgccGCcGCGCGCGAc -3'
miRNA:   3'- -GUC-GUGCCCGa----CCU-------UGaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 74708 0.67 0.603157
Target:  5'- -cGCGCGGGCgcGGAACcggGC-CGCGGc -3'
miRNA:   3'- guCGUGCCCGa-CCUUGa--CGcGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 59401 0.67 0.603157
Target:  5'- gAGCcCGGGCUcgccggcgccGGcGCUGuCGCGCGGc -3'
miRNA:   3'- gUCGuGCCCGA----------CCuUGAC-GCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 44293 0.68 0.592979
Target:  5'- cCAGCgGCGGGCcaGGGccGCUGCcCGCGGg -3'
miRNA:   3'- -GUCG-UGCCCGa-CCU--UGACGcGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 74046 0.68 0.592979
Target:  5'- cCAGCGCgccgggGGGCUGcGGcaGCUGCGCGaCGc- -3'
miRNA:   3'- -GUCGUG------CCCGAC-CU--UGACGCGC-GCuu -5'
23609 3' -59.7 NC_005261.1 + 97441 0.68 0.592979
Target:  5'- gGGCGCGGGuCUGGGcuucgGCgGCGC-CGGGa -3'
miRNA:   3'- gUCGUGCCC-GACCU-----UGaCGCGcGCUU- -5'
23609 3' -59.7 NC_005261.1 + 97627 0.68 0.592979
Target:  5'- gGGCggaGCGGGC-GGAGC-GgGCGCGGGu -3'
miRNA:   3'- gUCG---UGCCCGaCCUUGaCgCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 133228 0.68 0.586885
Target:  5'- gAGCugGGGCccuacauggcGGAGCacuacccgcaggcgGCGCGCGAGu -3'
miRNA:   3'- gUCGugCCCGa---------CCUUGa-------------CGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 113306 0.68 0.582829
Target:  5'- -uGcCGCGGGcCUGGGcccgGCUGCGCGaGAAg -3'
miRNA:   3'- guC-GUGCCC-GACCU----UGACGCGCgCUU- -5'
23609 3' -59.7 NC_005261.1 + 80067 0.68 0.582829
Target:  5'- gGGCGCgggGGGCguggGGGACgcggaccgGCGCGCGc- -3'
miRNA:   3'- gUCGUG---CCCGa---CCUUGa-------CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 1918 0.68 0.582829
Target:  5'- cCAGCGCGcGGCgc--ACUGCGcCGCGGg -3'
miRNA:   3'- -GUCGUGC-CCGaccuUGACGC-GCGCUu -5'
23609 3' -59.7 NC_005261.1 + 33834 0.68 0.572714
Target:  5'- gGGCGCGGGCccccUGGcGCUGgGCGgGc- -3'
miRNA:   3'- gUCGUGCCCG----ACCuUGACgCGCgCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.