Results 21 - 40 of 123 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 29813 | 0.71 | 0.419361 |
Target: 5'- gCGGCGCGGGCgcccGcgccgcgcucgccGAGCUGCGCGCc-- -3' miRNA: 3'- -GUCGUGCCCGa---C-------------CUUGACGCGCGcuu -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 29890 | 0.66 | 0.684712 |
Target: 5'- cCAGCGCccGGGCccGcGGCaGCGCGCGAGc -3' miRNA: 3'- -GUCGUG--CCCGa-CcUUGaCGCGCGCUU- -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 29924 | 0.67 | 0.654221 |
Target: 5'- -uGCGCGaGCUGGcggacGCUGCGCuGCGGc -3' miRNA: 3'- guCGUGCcCGACCu----UGACGCG-CGCUu -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 30125 | 0.66 | 0.704836 |
Target: 5'- uGGCGCGGcccgcgacgcGgUGGAGC-GCGCGCGc- -3' miRNA: 3'- gUCGUGCC----------CgACCUUGaCGCGCGCuu -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 32073 | 0.68 | 0.571705 |
Target: 5'- gAGCGCGGcGCUGGGGCU-CGgggagccggacuuCGCGGAg -3' miRNA: 3'- gUCGUGCC-CGACCUUGAcGC-------------GCGCUU- -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 32190 | 0.73 | 0.288171 |
Target: 5'- gCGGCGCGcGCUGGAGCUgGCGCcCGAc -3' miRNA: 3'- -GUCGUGCcCGACCUUGA-CGCGcGCUu -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 32550 | 0.71 | 0.386023 |
Target: 5'- gCGGCGCGGGCcGGc---GCGCGUGGAa -3' miRNA: 3'- -GUCGUGCCCGaCCuugaCGCGCGCUU- -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 33609 | 0.73 | 0.323334 |
Target: 5'- cCGGCGCGGGCggcGGGGCccggggGCGCGCc-- -3' miRNA: 3'- -GUCGUGCCCGa--CCUUGa-----CGCGCGcuu -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 33834 | 0.68 | 0.572714 |
Target: 5'- gGGCGCGGGCccccUGGcGCUGgGCGgGc- -3' miRNA: 3'- gUCGUGCCCG----ACCuUGACgCGCgCuu -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 34459 | 0.69 | 0.493804 |
Target: 5'- gGGCACGGGCcgGGGGCcccguaccUGCG-GCGGGu -3' miRNA: 3'- gUCGUGCCCGa-CCUUG--------ACGCgCGCUU- -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 36981 | 0.7 | 0.456225 |
Target: 5'- uCGGUGCGGGCUccagccGGAgcccgcggGCUGCGCGgGGc -3' miRNA: 3'- -GUCGUGCCCGA------CCU--------UGACGCGCgCUu -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 38172 | 0.69 | 0.532737 |
Target: 5'- gCAGCACGGcugcCUGGAGgcCUGgGCGCGc- -3' miRNA: 3'- -GUCGUGCCc---GACCUU--GACgCGCGCuu -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 38520 | 0.71 | 0.4029 |
Target: 5'- aGGCGCGcGCUGG--CUGCGCGCGc- -3' miRNA: 3'- gUCGUGCcCGACCuuGACGCGCGCuu -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 38941 | 0.7 | 0.44707 |
Target: 5'- gCGGC-CGGGC-GGGccGCgGCGCGCGGg -3' miRNA: 3'- -GUCGuGCCCGaCCU--UGaCGCGCGCUu -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 39891 | 0.69 | 0.522893 |
Target: 5'- -cGCGCGcGGCUGuGcAGCUggcGCGCGCGGc -3' miRNA: 3'- guCGUGC-CCGAC-C-UUGA---CGCGCGCUu -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 43115 | 0.67 | 0.621528 |
Target: 5'- uGGCGCGGGaUUGGcGCgccuacacacgcGCGCGCGGc -3' miRNA: 3'- gUCGUGCCC-GACCuUGa-----------CGCGCGCUu -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 43354 | 0.67 | 0.654221 |
Target: 5'- -uGcCugGGGCUGGugccGCUGCG-GCGGc -3' miRNA: 3'- guC-GugCCCGACCu---UGACGCgCGCUu -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 43794 | 0.66 | 0.704836 |
Target: 5'- gGGCgccGCGGGUgagGGGGCgccggGCGCGCc-- -3' miRNA: 3'- gUCG---UGCCCGa--CCUUGa----CGCGCGcuu -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 44246 | 0.66 | 0.67458 |
Target: 5'- cCAGCGCGcGGCc-GAcgccGCgGCGCGCGGGg -3' miRNA: 3'- -GUCGUGC-CCGacCU----UGaCGCGCGCUU- -5' |
|||||||
23609 | 3' | -59.7 | NC_005261.1 | + | 44293 | 0.68 | 0.592979 |
Target: 5'- cCAGCgGCGGGCcaGGGccGCUGCcCGCGGg -3' miRNA: 3'- -GUCG-UGCCCGa-CCU--UGACGcGCGCUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home