miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 3' -59.7 NC_005261.1 + 29813 0.71 0.419361
Target:  5'- gCGGCGCGGGCgcccGcgccgcgcucgccGAGCUGCGCGCc-- -3'
miRNA:   3'- -GUCGUGCCCGa---C-------------CUUGACGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 29890 0.66 0.684712
Target:  5'- cCAGCGCccGGGCccGcGGCaGCGCGCGAGc -3'
miRNA:   3'- -GUCGUG--CCCGa-CcUUGaCGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 29924 0.67 0.654221
Target:  5'- -uGCGCGaGCUGGcggacGCUGCGCuGCGGc -3'
miRNA:   3'- guCGUGCcCGACCu----UGACGCG-CGCUu -5'
23609 3' -59.7 NC_005261.1 + 30125 0.66 0.704836
Target:  5'- uGGCGCGGcccgcgacgcGgUGGAGC-GCGCGCGc- -3'
miRNA:   3'- gUCGUGCC----------CgACCUUGaCGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 32073 0.68 0.571705
Target:  5'- gAGCGCGGcGCUGGGGCU-CGgggagccggacuuCGCGGAg -3'
miRNA:   3'- gUCGUGCC-CGACCUUGAcGC-------------GCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 32190 0.73 0.288171
Target:  5'- gCGGCGCGcGCUGGAGCUgGCGCcCGAc -3'
miRNA:   3'- -GUCGUGCcCGACCUUGA-CGCGcGCUu -5'
23609 3' -59.7 NC_005261.1 + 32550 0.71 0.386023
Target:  5'- gCGGCGCGGGCcGGc---GCGCGUGGAa -3'
miRNA:   3'- -GUCGUGCCCGaCCuugaCGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 33609 0.73 0.323334
Target:  5'- cCGGCGCGGGCggcGGGGCccggggGCGCGCc-- -3'
miRNA:   3'- -GUCGUGCCCGa--CCUUGa-----CGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 33834 0.68 0.572714
Target:  5'- gGGCGCGGGCccccUGGcGCUGgGCGgGc- -3'
miRNA:   3'- gUCGUGCCCG----ACCuUGACgCGCgCuu -5'
23609 3' -59.7 NC_005261.1 + 34459 0.69 0.493804
Target:  5'- gGGCACGGGCcgGGGGCcccguaccUGCG-GCGGGu -3'
miRNA:   3'- gUCGUGCCCGa-CCUUG--------ACGCgCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 36981 0.7 0.456225
Target:  5'- uCGGUGCGGGCUccagccGGAgcccgcggGCUGCGCGgGGc -3'
miRNA:   3'- -GUCGUGCCCGA------CCU--------UGACGCGCgCUu -5'
23609 3' -59.7 NC_005261.1 + 38172 0.69 0.532737
Target:  5'- gCAGCACGGcugcCUGGAGgcCUGgGCGCGc- -3'
miRNA:   3'- -GUCGUGCCc---GACCUU--GACgCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 38520 0.71 0.4029
Target:  5'- aGGCGCGcGCUGG--CUGCGCGCGc- -3'
miRNA:   3'- gUCGUGCcCGACCuuGACGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 38941 0.7 0.44707
Target:  5'- gCGGC-CGGGC-GGGccGCgGCGCGCGGg -3'
miRNA:   3'- -GUCGuGCCCGaCCU--UGaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 39891 0.69 0.522893
Target:  5'- -cGCGCGcGGCUGuGcAGCUggcGCGCGCGGc -3'
miRNA:   3'- guCGUGC-CCGAC-C-UUGA---CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 43115 0.67 0.621528
Target:  5'- uGGCGCGGGaUUGGcGCgccuacacacgcGCGCGCGGc -3'
miRNA:   3'- gUCGUGCCC-GACCuUGa-----------CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 43354 0.67 0.654221
Target:  5'- -uGcCugGGGCUGGugccGCUGCG-GCGGc -3'
miRNA:   3'- guC-GugCCCGACCu---UGACGCgCGCUu -5'
23609 3' -59.7 NC_005261.1 + 43794 0.66 0.704836
Target:  5'- gGGCgccGCGGGUgagGGGGCgccggGCGCGCc-- -3'
miRNA:   3'- gUCG---UGCCCGa--CCUUGa----CGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 44246 0.66 0.67458
Target:  5'- cCAGCGCGcGGCc-GAcgccGCgGCGCGCGGGg -3'
miRNA:   3'- -GUCGUGC-CCGacCU----UGaCGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 44293 0.68 0.592979
Target:  5'- cCAGCgGCGGGCcaGGGccGCUGCcCGCGGg -3'
miRNA:   3'- -GUCG-UGCCCGa-CCU--UGACGcGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.