miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 3' -59.7 NC_005261.1 + 1725 0.69 0.532737
Target:  5'- gCGGCACGGGCacc-GCgGUGCGCGGg -3'
miRNA:   3'- -GUCGUGCCCGaccuUGaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 1918 0.68 0.582829
Target:  5'- cCAGCGCGcGGCgc--ACUGCGcCGCGGg -3'
miRNA:   3'- -GUCGUGC-CCGaccuUGACGC-GCGCUu -5'
23609 3' -59.7 NC_005261.1 + 2546 0.66 0.704836
Target:  5'- cCAGCgccGCGGcGCUGGGcGCggGCGUGUGGu -3'
miRNA:   3'- -GUCG---UGCC-CGACCU-UGa-CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 3400 0.7 0.465478
Target:  5'- cCGGCacuuccgccgGCGGGCU-GAAgaGCGCGCGGg -3'
miRNA:   3'- -GUCG----------UGCCCGAcCUUgaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 5122 0.68 0.542647
Target:  5'- uCGGCGCGGGCggcccgccGGcGCUcGCGCGCc-- -3'
miRNA:   3'- -GUCGUGCCCGa-------CCuUGA-CGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 9148 0.69 0.513119
Target:  5'- aGGCAaauCGGGCUGGGACcugGCGcCGCc-- -3'
miRNA:   3'- gUCGU---GCCCGACCUUGa--CGC-GCGcuu -5'
23609 3' -59.7 NC_005261.1 + 12307 0.67 0.644011
Target:  5'- gGGCACGGGCgcguagccGGCggGCGCGCGc- -3'
miRNA:   3'- gUCGUGCCCGacc-----UUGa-CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 12640 0.71 0.411513
Target:  5'- cCGGCGCGGuCUGGGGCcGCgccgGCGCGAc -3'
miRNA:   3'- -GUCGUGCCcGACCUUGaCG----CGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 13029 0.69 0.532737
Target:  5'- cCAGCACcacgagccaGGGCgcGGGGCcGCGCGCGc- -3'
miRNA:   3'- -GUCGUG---------CCCGa-CCUUGaCGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 13688 0.7 0.44707
Target:  5'- -cGCGCGGGCgUGGGGCgggGCGgGCu-- -3'
miRNA:   3'- guCGUGCCCG-ACCUUGa--CGCgCGcuu -5'
23609 3' -59.7 NC_005261.1 + 14456 0.67 0.623572
Target:  5'- gGGCGCGcGGC-GGAGCU-CGCGCu-- -3'
miRNA:   3'- gUCGUGC-CCGaCCUUGAcGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 15940 0.67 0.623572
Target:  5'- gGGCcCGGGCaGGAGCcGgGgGCGAGu -3'
miRNA:   3'- gUCGuGCCCGaCCUUGaCgCgCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 16176 0.68 0.542647
Target:  5'- gGGCGCGGGCguggcGGGGgUGgGCGgGGg -3'
miRNA:   3'- gUCGUGCCCGa----CCUUgACgCGCgCUu -5'
23609 3' -59.7 NC_005261.1 + 17170 0.7 0.438019
Target:  5'- gCGGCGCGGGCgUGGGcagccCUGC-CGCGGc -3'
miRNA:   3'- -GUCGUGCCCG-ACCUu----GACGcGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 17549 0.69 0.500528
Target:  5'- gCGGCGCGGGCccgccguucggcggUGGccUUGCGgGCGAGc -3'
miRNA:   3'- -GUCGUGCCCG--------------ACCuuGACGCgCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 19061 0.67 0.633792
Target:  5'- gGGUACGGGCUGcGcGGCUcucgGCGCGUGc- -3'
miRNA:   3'- gUCGUGCCCGAC-C-UUGA----CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 21681 0.72 0.353698
Target:  5'- cCGGCugGGGCUcGAGCgcgucGCGgGCGAGc -3'
miRNA:   3'- -GUCGugCCCGAcCUUGa----CGCgCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 21808 0.67 0.654221
Target:  5'- cCGGC-CGGGCcGGGcccGCggcggGCGCGCGu- -3'
miRNA:   3'- -GUCGuGCCCGaCCU---UGa----CGCGCGCuu -5'
23609 3' -59.7 NC_005261.1 + 23506 0.69 0.522893
Target:  5'- aGGCGCGGGCccugGGAGCacgcgGuCGgGCGAGc -3'
miRNA:   3'- gUCGUGCCCGa---CCUUGa----C-GCgCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 27243 0.68 0.542647
Target:  5'- aGGCGCcuGGGgUGGGGCgggGUGUGCGGg -3'
miRNA:   3'- gUCGUG--CCCgACCUUGa--CGCGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.