miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23609 3' -59.7 NC_005261.1 + 85666 1.05 0.001684
Target:  5'- gCAGCACGGGCUGGAACUGCGCGCGAAa -3'
miRNA:   3'- -GUCGUGCCCGACCUUGACGCGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 116478 0.82 0.079104
Target:  5'- cCGGCGCGGGC-GGGGCggGCGCGCGGu -3'
miRNA:   3'- -GUCGUGCCCGaCCUUGa-CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 68109 0.8 0.100414
Target:  5'- aAGUuCGGGCUGGAGCUGCGCGgGc- -3'
miRNA:   3'- gUCGuGCCCGACCUUGACGCGCgCuu -5'
23609 3' -59.7 NC_005261.1 + 135452 0.78 0.14089
Target:  5'- gCGGCGCGGGCgcugcgGGAccucguACUGCGCgGCGAGa -3'
miRNA:   3'- -GUCGUGCCCGa-----CCU------UGACGCG-CGCUU- -5'
23609 3' -59.7 NC_005261.1 + 92816 0.78 0.148313
Target:  5'- -cGCGCGGGCgUGGGACcGCGCGCaGAGu -3'
miRNA:   3'- guCGUGCCCG-ACCUUGaCGCGCG-CUU- -5'
23609 3' -59.7 NC_005261.1 + 44738 0.76 0.200736
Target:  5'- gCAGC-UGGGCcccGAGCUGCGCGCGAc -3'
miRNA:   3'- -GUCGuGCCCGac-CUUGACGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 69510 0.75 0.221513
Target:  5'- cCGGCgGCGGGCUgccGGAGCUG-GCGCGGg -3'
miRNA:   3'- -GUCG-UGCCCGA---CCUUGACgCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 45990 0.75 0.221513
Target:  5'- gCAGCACGGGCgccAugUGUGCGCGGc -3'
miRNA:   3'- -GUCGUGCCCGaccUugACGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 51524 0.75 0.232573
Target:  5'- gGGCGcCGGGCUGGGGCUGUcgcuaGCGCa-- -3'
miRNA:   3'- gUCGU-GCCCGACCUUGACG-----CGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 97585 0.74 0.268554
Target:  5'- uGGCGCGGGC-GGAGCgggcggaGCGgGCGGAg -3'
miRNA:   3'- gUCGUGCCCGaCCUUGa------CGCgCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 126950 0.74 0.274971
Target:  5'- gGGCGcCGGGCgcgGGGGCgGCaGCGCGAAc -3'
miRNA:   3'- gUCGU-GCCCGa--CCUUGaCG-CGCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 32190 0.73 0.288171
Target:  5'- gCGGCGCGcGCUGGAGCUgGCGCcCGAc -3'
miRNA:   3'- -GUCGUGCcCGACCUUGA-CGCGcGCUu -5'
23609 3' -59.7 NC_005261.1 + 66752 0.73 0.288171
Target:  5'- -uGCACGGGCUGGuccaccggguguGGCccgucGCGCGCGAu -3'
miRNA:   3'- guCGUGCCCGACC------------UUGa----CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 48324 0.73 0.301863
Target:  5'- gGGCcCGGGCUcgGGGGC-GCGCGCGGc -3'
miRNA:   3'- gUCGuGCCCGA--CCUUGaCGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 33609 0.73 0.323334
Target:  5'- cCGGCGCGGGCggcGGGGCccggggGCGCGCc-- -3'
miRNA:   3'- -GUCGUGCCCGa--CCUUGa-----CGCGCGcuu -5'
23609 3' -59.7 NC_005261.1 + 127701 0.72 0.330739
Target:  5'- gCGGCGCcGGa-GGAGCUGCGCGUGGc -3'
miRNA:   3'- -GUCGUGcCCgaCCUUGACGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 21681 0.72 0.353698
Target:  5'- cCGGCugGGGCUcGAGCgcgucGCGgGCGAGc -3'
miRNA:   3'- -GUCGugCCCGAcCUUGa----CGCgCGCUU- -5'
23609 3' -59.7 NC_005261.1 + 64112 0.72 0.369619
Target:  5'- gCGGCACGGGC-GGcACgUGCcGCGCGGc -3'
miRNA:   3'- -GUCGUGCCCGaCCuUG-ACG-CGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 121788 0.72 0.369619
Target:  5'- gCGGCcgGCGGGCUGGGcaggggGCGCGUGGc -3'
miRNA:   3'- -GUCG--UGCCCGACCUuga---CGCGCGCUu -5'
23609 3' -59.7 NC_005261.1 + 32550 0.71 0.386023
Target:  5'- gCGGCGCGGGCcGGc---GCGCGUGGAa -3'
miRNA:   3'- -GUCGUGCCCGaCCuugaCGCGCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.