Results 21 - 24 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23611 | 3' | -55.7 | NC_005261.1 | + | 84328 | 0.66 | 0.887702 |
Target: 5'- -gCGUCCGGGgCCGc--GCUCgCGCACg -3' miRNA: 3'- caGCAGGUCCaGGUacaCGAG-GUGUG- -5' |
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23611 | 3' | -55.7 | NC_005261.1 | + | 80840 | 0.66 | 0.873364 |
Target: 5'- cUCGUCCG---UCGUGUGCcagCCGCGCa -3' miRNA: 3'- cAGCAGGUccaGGUACACGa--GGUGUG- -5' |
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23611 | 3' | -55.7 | NC_005261.1 | + | 57829 | 0.66 | 0.873364 |
Target: 5'- ------gGGGUCCAcGUGCUCCGCGg -3' miRNA: 3'- cagcaggUCCAGGUaCACGAGGUGUg -5' |
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23611 | 3' | -55.7 | NC_005261.1 | + | 59755 | 0.66 | 0.901111 |
Target: 5'- cUCcaCCAGGcaggccUCCAUGUGCUCgGcCGCa -3' miRNA: 3'- cAGcaGGUCC------AGGUACACGAGgU-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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