miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 22768 0.71 0.395953
Target:  5'- cGCGUCUgGGGGCG-GGCCCCGcgAGAa- -3'
miRNA:   3'- -CGCGGA-CCUCGUgCCGGGGCa-UCUgc -5'
23611 5' -60.9 NC_005261.1 + 62378 0.71 0.395953
Target:  5'- cGCGCCUGcGGCAgCGGCaCCGUcGugGg -3'
miRNA:   3'- -CGCGGACcUCGU-GCCGgGGCAuCugC- -5'
23611 5' -60.9 NC_005261.1 + 84282 0.71 0.404208
Target:  5'- gGUGCCgccGGcGGCccCGGCCCCGgcGGCGc -3'
miRNA:   3'- -CGCGGa--CC-UCGu-GCCGGGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 23496 0.71 0.412571
Target:  5'- cCGCCUGGgcaGGCGCgGGCCCUGggAGcACGc -3'
miRNA:   3'- cGCGGACC---UCGUG-CCGGGGCa-UC-UGC- -5'
23611 5' -60.9 NC_005261.1 + 100012 0.71 0.412571
Target:  5'- gGCGCCcauGAGCGCGGCCacgacaagguCCGcGGGCGu -3'
miRNA:   3'- -CGCGGac-CUCGUGCCGG----------GGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 109190 0.71 0.412571
Target:  5'- aGCGCCgcgucgGGcguGCGCaGGCgCUCGUAGGCGc -3'
miRNA:   3'- -CGCGGa-----CCu--CGUG-CCG-GGGCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 58036 0.71 0.42104
Target:  5'- aGCuCCagGGAGCGCGGCCgCGU-GAUGu -3'
miRNA:   3'- -CGcGGa-CCUCGUGCCGGgGCAuCUGC- -5'
23611 5' -60.9 NC_005261.1 + 112680 0.7 0.429613
Target:  5'- aGCGCgaGGGGCugGGCgucgaggccgugCCCGUgcaGGACc -3'
miRNA:   3'- -CGCGgaCCUCGugCCG------------GGGCA---UCUGc -5'
23611 5' -60.9 NC_005261.1 + 35908 0.7 0.433071
Target:  5'- cCGCCgcGGcAGCGCGGCCCCGcgccgcagcccagcGGGCGc -3'
miRNA:   3'- cGCGGa-CC-UCGUGCCGGGGCa-------------UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 31363 0.7 0.438288
Target:  5'- -gGCCUGGAuGUcgcagaucGCGGaCCCCGaGGACGu -3'
miRNA:   3'- cgCGGACCU-CG--------UGCC-GGGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 122262 0.7 0.438288
Target:  5'- aGCGCCgccgccgucagGGccguuagcaucAGCGCGGCCCCGcugccgcAGGCGa -3'
miRNA:   3'- -CGCGGa----------CC-----------UCGUGCCGGGGCa------UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 69548 0.7 0.438288
Target:  5'- cGCGCgCUGGGGacgGCGGCCCCcuacGUcacccucauagAGGCGg -3'
miRNA:   3'- -CGCG-GACCUCg--UGCCGGGG----CA-----------UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 40256 0.7 0.447063
Target:  5'- aGCGCCaUGGcggcggccgcGGCGgGGCUCaGUAGACGa -3'
miRNA:   3'- -CGCGG-ACC----------UCGUgCCGGGgCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 6238 0.7 0.447063
Target:  5'- uGCGCCcggGGAGgGCcugcccGCCCCGcgGGGCGg -3'
miRNA:   3'- -CGCGGa--CCUCgUGc-----CGGGGCa-UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 109234 0.7 0.447063
Target:  5'- cGCGCgCUGcAGCGCGGCCCaGUgcgGGGCc -3'
miRNA:   3'- -CGCG-GACcUCGUGCCGGGgCA---UCUGc -5'
23611 5' -60.9 NC_005261.1 + 59416 0.7 0.455934
Target:  5'- gGCGCCggcgcUGucGCGCGGCCCgGcAGGCGc -3'
miRNA:   3'- -CGCGG-----ACcuCGUGCCGGGgCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 4705 0.7 0.464899
Target:  5'- cGCGUCUuuGGCAuCGGCCCCGgagucGGCGg -3'
miRNA:   3'- -CGCGGAccUCGU-GCCGGGGCau---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 32194 0.7 0.464899
Target:  5'- cGCGCgCUGGAGCugGcGCCC----GACGa -3'
miRNA:   3'- -CGCG-GACCUCGugC-CGGGgcauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 83839 0.7 0.473956
Target:  5'- cCGCUggcGGGcCGCGGCCCCGcUGGGCu -3'
miRNA:   3'- cGCGGa--CCUcGUGCCGGGGC-AUCUGc -5'
23611 5' -60.9 NC_005261.1 + 130582 0.7 0.473956
Target:  5'- aGCGCCgcc-GCGCGGCCCCGcgccuGGCc -3'
miRNA:   3'- -CGCGGaccuCGUGCCGGGGCau---CUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.