miRNA display CGI


Results 41 - 60 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 90881 0.66 0.677242
Target:  5'- uGCGCgCUGGgcgacggcauGGCGCGGCagguCUCGgcGGCGc -3'
miRNA:   3'- -CGCG-GACC----------UCGUGCCG----GGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 128567 0.66 0.677242
Target:  5'- gGCGCuCUGGGGCcCGGUUgCGcuGGCGg -3'
miRNA:   3'- -CGCG-GACCUCGuGCCGGgGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 14176 0.66 0.677242
Target:  5'- cGCGUCUcGGGGCGCgggucaGGCCCagggaGgaAGACGg -3'
miRNA:   3'- -CGCGGA-CCUCGUG------CCGGGg----Ca-UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 30086 0.66 0.677242
Target:  5'- gGCGCacccGGAGCGCGuGCUCCG--GGCa -3'
miRNA:   3'- -CGCGga--CCUCGUGC-CGGGGCauCUGc -5'
23611 5' -60.9 NC_005261.1 + 31085 0.66 0.676259
Target:  5'- cGCGUgCUGG-GCcccaugccgcccgGCGGCCCCGccgccGACGg -3'
miRNA:   3'- -CGCG-GACCuCG-------------UGCCGGGGCau---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 69230 0.66 0.674292
Target:  5'- uGCGCgCUGGGGCGguucgccgaggcgcUGGCCCgCGccGACc -3'
miRNA:   3'- -CGCG-GACCUCGU--------------GCCGGG-GCauCUGc -5'
23611 5' -60.9 NC_005261.1 + 71213 0.66 0.667397
Target:  5'- uGCGCgaUGGuGCgcgcgcgcacGCGGCCCuCGgcGGCGc -3'
miRNA:   3'- -CGCGg-ACCuCG----------UGCCGGG-GCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 74690 0.66 0.667397
Target:  5'- cGCGCg-GGAGC-UGGCCgCCGcgcGGGCGc -3'
miRNA:   3'- -CGCGgaCCUCGuGCCGG-GGCa--UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 132549 0.66 0.667397
Target:  5'- cGCGCgaGGgcgaggcgcAGUACGGCUgCGaAGACGu -3'
miRNA:   3'- -CGCGgaCC---------UCGUGCCGGgGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 77031 0.66 0.667397
Target:  5'- aCGCCgaGGccgcgcGCGCGGCCCuCGgcGACc -3'
miRNA:   3'- cGCGGa-CCu-----CGUGCCGGG-GCauCUGc -5'
23611 5' -60.9 NC_005261.1 + 135001 0.66 0.66641
Target:  5'- gGCGCCccUGGcGCggcgggcccgcacGCGGCCgCGgcGGCGa -3'
miRNA:   3'- -CGCGG--ACCuCG-------------UGCCGGgGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 65508 0.66 0.661476
Target:  5'- gGCGUCaUGGcgcacuccaucacccAGCGCGGCCgCGcGGGCa -3'
miRNA:   3'- -CGCGG-ACC---------------UCGUGCCGGgGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 57649 0.66 0.657524
Target:  5'- cCGCCc-GAGCACGcCCCCG-AGACu -3'
miRNA:   3'- cGCGGacCUCGUGCcGGGGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 125698 0.66 0.657524
Target:  5'- cGgGCUUGGcccGGCgACGGCCgCCGcGGGCu -3'
miRNA:   3'- -CgCGGACC---UCG-UGCCGG-GGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 27360 0.66 0.657524
Target:  5'- gGCGCC-GGAccgGCGCGaGgCCgGUGGGCa -3'
miRNA:   3'- -CGCGGaCCU---CGUGC-CgGGgCAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 43306 0.67 0.651591
Target:  5'- gGCGCC-GGcAGCcCGGCCagcuucgcccgguaCGUAGACu -3'
miRNA:   3'- -CGCGGaCC-UCGuGCCGGg-------------GCAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 109321 0.67 0.647632
Target:  5'- -gGCCUccGcGAGCGCGGCCgCGgggucGGCGg -3'
miRNA:   3'- cgCGGA--C-CUCGUGCCGGgGCau---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 3917 0.67 0.647632
Target:  5'- cGCGCCgccGGcGC-CGGCCUCcggGUAGGCc -3'
miRNA:   3'- -CGCGGa--CCuCGuGCCGGGG---CAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 62299 0.67 0.647632
Target:  5'- gGCGCCgcgcgGGcGCgcgGCGGCCCCGcGGuCc -3'
miRNA:   3'- -CGCGGa----CCuCG---UGCCGGGGCaUCuGc -5'
23611 5' -60.9 NC_005261.1 + 34917 0.67 0.647632
Target:  5'- -gGUC-GGGGCGCGGCCaCgCGggGGGCGg -3'
miRNA:   3'- cgCGGaCCUCGUGCCGG-G-GCa-UCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.