miRNA display CGI


Results 21 - 40 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 75326 0.66 0.700716
Target:  5'- gGCGCgC-GGAGCccugugaccuucguCGGCCUCGUGGAg- -3'
miRNA:   3'- -CGCG-GaCCUCGu-------------GCCGGGGCAUCUgc -5'
23611 5' -60.9 NC_005261.1 + 130177 0.66 0.696822
Target:  5'- gGCGCCggcagcagGGAGCugACGGCcaccaccgccuCCUGcAGGCGg -3'
miRNA:   3'- -CGCGGa-------CCUCG--UGCCG-----------GGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 13460 0.66 0.696822
Target:  5'- gGCGCCUcGGGguggaagauGCAC-GUCUCGUAGAUGc -3'
miRNA:   3'- -CGCGGA-CCU---------CGUGcCGGGGCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 46284 0.66 0.696822
Target:  5'- gGCGCuCUGGccgggcaacGGCGCGccgcaguaGCCCCGcgAGGCu -3'
miRNA:   3'- -CGCG-GACC---------UCGUGC--------CGGGGCa-UCUGc -5'
23611 5' -60.9 NC_005261.1 + 59521 0.66 0.696822
Target:  5'- cGCGcCCUGGAGCA--GCCCCGccGcCa -3'
miRNA:   3'- -CGC-GGACCUCGUgcCGGGGCauCuGc -5'
23611 5' -60.9 NC_005261.1 + 71790 0.66 0.696822
Target:  5'- cGCaGCU--GAGCGCGGCccggCCCGUggGGACGu -3'
miRNA:   3'- -CG-CGGacCUCGUGCCG----GGGCA--UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 76437 0.66 0.696822
Target:  5'- gGCGCCaUGGcGgACGcGCCCgaCGgcGACGg -3'
miRNA:   3'- -CGCGG-ACCuCgUGC-CGGG--GCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 102504 0.66 0.696822
Target:  5'- aGCGCCUGGGccuuGCGCaGGUCCgCGU--GCa -3'
miRNA:   3'- -CGCGGACCU----CGUG-CCGGG-GCAucUGc -5'
23611 5' -60.9 NC_005261.1 + 30772 0.66 0.696822
Target:  5'- cGgGCC-GGAGCcCGGCCgCGgcGGugGa -3'
miRNA:   3'- -CgCGGaCCUCGuGCCGGgGCa-UCugC- -5'
23611 5' -60.9 NC_005261.1 + 51417 0.66 0.696822
Target:  5'- cGCGCCcaccgccuGCugGGCCCCG--GGCGc -3'
miRNA:   3'- -CGCGGaccu----CGugCCGGGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 30217 0.66 0.695848
Target:  5'- cCGCgCUGGcGGCGCgaaccguGGCCCCGcUGGcGCGg -3'
miRNA:   3'- cGCG-GACC-UCGUG-------CCGGGGC-AUC-UGC- -5'
23611 5' -60.9 NC_005261.1 + 1808 0.66 0.693896
Target:  5'- gGCGCCccGGGGUagagccgcgcguaaGCGGCCUCGgcGcGCGc -3'
miRNA:   3'- -CGCGGa-CCUCG--------------UGCCGGGGCauC-UGC- -5'
23611 5' -60.9 NC_005261.1 + 117676 0.66 0.690967
Target:  5'- cGCGCCcGGccgggcccgcggcgaGGC-CGGCCCUG-AGGCc -3'
miRNA:   3'- -CGCGGaCC---------------UCGuGCCGGGGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 100950 0.66 0.687054
Target:  5'- cGCGUCcacGGcgcGCGCGGUCUCGUGGAa- -3'
miRNA:   3'- -CGCGGa--CCu--CGUGCCGGGGCAUCUgc -5'
23611 5' -60.9 NC_005261.1 + 134250 0.66 0.687054
Target:  5'- cGCGCCcu--GCGCGGCCgCGUAcccGAUGu -3'
miRNA:   3'- -CGCGGaccuCGUGCCGGgGCAU---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 58216 0.66 0.687054
Target:  5'- cGCGCCaGcAGCGC-GCCCgCGgcGGCGg -3'
miRNA:   3'- -CGCGGaCcUCGUGcCGGG-GCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 103055 0.66 0.687054
Target:  5'- aGCGCCUGucccGGCACGGCgCCCa------ -3'
miRNA:   3'- -CGCGGACc---UCGUGCCG-GGGcaucugc -5'
23611 5' -60.9 NC_005261.1 + 55057 0.66 0.687054
Target:  5'- gGgGCCgGcGAGCuCGGCCgCCGaAGGCa -3'
miRNA:   3'- -CgCGGaC-CUCGuGCCGG-GGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 46382 0.66 0.687054
Target:  5'- uCGCuCUcGGcGC-CGGCCCCGUcgccGACGg -3'
miRNA:   3'- cGCG-GA-CCuCGuGCCGGGGCAu---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 14176 0.66 0.677242
Target:  5'- cGCGUCUcGGGGCGCgggucaGGCCCagggaGgaAGACGg -3'
miRNA:   3'- -CGCGGA-CCUCGUG------CCGGGg----Ca-UCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.