miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 84562 1.11 0.000765
Target:  5'- aGCGCCUGGAGCACGGCCCCGUAGACGg -3'
miRNA:   3'- -CGCGGACCUCGUGCCGGGGCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 110680 0.82 0.086015
Target:  5'- aGCGCCUGGAGCACGagggcuuccgcGCCCaCGUGGcCGu -3'
miRNA:   3'- -CGCGGACCUCGUGC-----------CGGG-GCAUCuGC- -5'
23611 5' -60.9 NC_005261.1 + 39377 0.78 0.146437
Target:  5'- gGCgGCCggGGAGgGCGGCCCUGgcGGCGa -3'
miRNA:   3'- -CG-CGGa-CCUCgUGCCGGGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 34452 0.77 0.161672
Target:  5'- cGCGCC-GGGGCACgggccgggGGCCCCGUAccugcGGCGg -3'
miRNA:   3'- -CGCGGaCCUCGUG--------CCGGGGCAU-----CUGC- -5'
23611 5' -60.9 NC_005261.1 + 94847 0.77 0.185395
Target:  5'- cGCGCCUGGccucggcgcucgcGCACGGCCCgGgcGGGCGg -3'
miRNA:   3'- -CGCGGACCu------------CGUGCCGGGgCa-UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 12333 0.77 0.187202
Target:  5'- cGCGCUUGGccGGCGCGGCCgCCGccgcGGCGg -3'
miRNA:   3'- -CGCGGACC--UCGUGCCGG-GGCau--CUGC- -5'
23611 5' -60.9 NC_005261.1 + 3656 0.76 0.191788
Target:  5'- cGCGUCUGGAGCGCaGGCCgCGgccGGCa -3'
miRNA:   3'- -CGCGGACCUCGUG-CCGGgGCau-CUGc -5'
23611 5' -60.9 NC_005261.1 + 83382 0.76 0.196472
Target:  5'- aGCGCg-GcGAGCGCGGCCUCGgccgAGGCGa -3'
miRNA:   3'- -CGCGgaC-CUCGUGCCGGGGCa---UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 104686 0.76 0.196472
Target:  5'- aGCGCCUGGGcCACcGCCCCGaagagcggcUGGACGg -3'
miRNA:   3'- -CGCGGACCUcGUGcCGGGGC---------AUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 21755 0.76 0.211127
Target:  5'- uGCGCCUGGAGCGCGcGCC----GGGCGa -3'
miRNA:   3'- -CGCGGACCUCGUGC-CGGggcaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 14834 0.75 0.221413
Target:  5'- uGCGCCgGGAGCACGGCagcaGgcGGCGg -3'
miRNA:   3'- -CGCGGaCCUCGUGCCGggg-CauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 87936 0.75 0.232122
Target:  5'- gGgGCCUGGAGCcgcgcgccgccACGGCCCgcCGgcGGCGg -3'
miRNA:   3'- -CgCGGACCUCG-----------UGCCGGG--GCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 120615 0.75 0.237638
Target:  5'- gGCGCCgUGGGGCuccugcuggugGCGGCCCUGUgccugcggcgcaAGGCGc -3'
miRNA:   3'- -CGCGG-ACCUCG-----------UGCCGGGGCA------------UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 22682 0.75 0.243264
Target:  5'- aGUGCCgccGGGGgACGGgCCCGgcGACGa -3'
miRNA:   3'- -CGCGGa--CCUCgUGCCgGGGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 38469 0.75 0.243264
Target:  5'- cGCGuuCCUGGAgcaGCACGGCCgCGgcGGCGu -3'
miRNA:   3'- -CGC--GGACCU---CGUGCCGGgGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 76653 0.75 0.249
Target:  5'- aGCGCCUGcGAGguCGGCgCCGUGcuggcccucgccGACGa -3'
miRNA:   3'- -CGCGGAC-CUCguGCCGgGGCAU------------CUGC- -5'
23611 5' -60.9 NC_005261.1 + 120962 0.75 0.249
Target:  5'- cGCGCCccgcGGGGCGCgugccgccgcaGGCCCCGUAGuCu -3'
miRNA:   3'- -CGCGGa---CCUCGUG-----------CCGGGGCAUCuGc -5'
23611 5' -60.9 NC_005261.1 + 116061 0.74 0.260807
Target:  5'- gGCGCCccgcgUGGcGCGcCGGuCCCCGUGGAUGc -3'
miRNA:   3'- -CGCGG-----ACCuCGU-GCC-GGGGCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 95808 0.74 0.260807
Target:  5'- gGCGCCggcgGGGGCucgcgguccucGCGGCgCuuGUGGGCGg -3'
miRNA:   3'- -CGCGGa---CCUCG-----------UGCCG-GggCAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 83673 0.74 0.26688
Target:  5'- cGCGCCUGG-GCGCGcagcgcGCCgCCG-AGGCGg -3'
miRNA:   3'- -CGCGGACCuCGUGC------CGG-GGCaUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.