miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23611 5' -60.9 NC_005261.1 + 1065 0.72 0.371849
Target:  5'- gGCGCggGGGGC-UGGCCCCGcuccaGGGCGa -3'
miRNA:   3'- -CGCGgaCCUCGuGCCGGGGCa----UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 1308 0.67 0.637729
Target:  5'- uCGCCggcGGcGGCACGcGCUCCG-GGACGc -3'
miRNA:   3'- cGCGGa--CC-UCGUGC-CGGGGCaUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 1394 0.68 0.53959
Target:  5'- aCGCCgGGcGcCGCGGCCgCGgcGGCGg -3'
miRNA:   3'- cGCGGaCCuC-GUGCCGGgGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 1454 0.67 0.644662
Target:  5'- gGCGCCUcGGcgugcggcuccagcAGCGCGGCCgCGcAGAa- -3'
miRNA:   3'- -CGCGGA-CC--------------UCGUGCCGGgGCaUCUgc -5'
23611 5' -60.9 NC_005261.1 + 1808 0.66 0.693896
Target:  5'- gGCGCCccGGGGUagagccgcgcguaaGCGGCCUCGgcGcGCGc -3'
miRNA:   3'- -CGCGGa-CCUCG--------------UGCCGGGGCauC-UGC- -5'
23611 5' -60.9 NC_005261.1 + 2391 0.68 0.567704
Target:  5'- cGCGCUggcgGcGAGCGCgcccgcgGGCCCCGcgcGGCGg -3'
miRNA:   3'- -CGCGGa---C-CUCGUG-------CCGGGGCau-CUGC- -5'
23611 5' -60.9 NC_005261.1 + 2995 0.66 0.716199
Target:  5'- -gGCCUGGcGGCcCGGCgCCG-GGGCu -3'
miRNA:   3'- cgCGGACC-UCGuGCCGgGGCaUCUGc -5'
23611 5' -60.9 NC_005261.1 + 3552 0.67 0.627822
Target:  5'- aGCGCg-GcGGGCGCGGCgCCGcuaAGGCGc -3'
miRNA:   3'- -CGCGgaC-CUCGUGCCGgGGCa--UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 3620 0.68 0.588292
Target:  5'- aGCuGCCcGGAGCACGcGCUCCG-GGuGCGc -3'
miRNA:   3'- -CG-CGGaCCUCGUGC-CGGGGCaUC-UGC- -5'
23611 5' -60.9 NC_005261.1 + 3656 0.76 0.191788
Target:  5'- cGCGUCUGGAGCGCaGGCCgCGgccGGCa -3'
miRNA:   3'- -CGCGGACCUCGUG-CCGGgGCau-CUGc -5'
23611 5' -60.9 NC_005261.1 + 3917 0.67 0.647632
Target:  5'- cGCGCCgccGGcGC-CGGCCUCcggGUAGGCc -3'
miRNA:   3'- -CGCGGa--CCuCGuGCCGGGG---CAUCUGc -5'
23611 5' -60.9 NC_005261.1 + 4705 0.7 0.464899
Target:  5'- cGCGUCUuuGGCAuCGGCCCCGgagucGGCGg -3'
miRNA:   3'- -CGCGGAccUCGU-GCCGGGGCau---CUGC- -5'
23611 5' -60.9 NC_005261.1 + 5414 0.68 0.549236
Target:  5'- gGCGCCgcgaacgaaGGAGacgacCGCGGCCgCGgcGGCGg -3'
miRNA:   3'- -CGCGGa--------CCUC-----GUGCCGGgGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 5490 0.67 0.637729
Target:  5'- cGCGCCgggggguagcUGGGGcCGCGGCagCGgcGGCGa -3'
miRNA:   3'- -CGCGG----------ACCUC-GUGCCGggGCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 6238 0.7 0.447063
Target:  5'- uGCGCCcggGGAGgGCcugcccGCCCCGcgGGGCGg -3'
miRNA:   3'- -CGCGGa--CCUCgUGc-----CGGGGCa-UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 9987 0.66 0.705571
Target:  5'- cGCGCCUcG-GCGCGGCcacccgcuugccaCCCGaccGGGCGg -3'
miRNA:   3'- -CGCGGAcCuCGUGCCG-------------GGGCa--UCUGC- -5'
23611 5' -60.9 NC_005261.1 + 11901 0.66 0.70654
Target:  5'- cGCGCCcgccGcGGGCcCGGCCCgGccGGCGg -3'
miRNA:   3'- -CGCGGa---C-CUCGuGCCGGGgCauCUGC- -5'
23611 5' -60.9 NC_005261.1 + 12333 0.77 0.187202
Target:  5'- cGCGCUUGGccGGCGCGGCCgCCGccgcGGCGg -3'
miRNA:   3'- -CGCGGACC--UCGUGCCGG-GGCau--CUGC- -5'
23611 5' -60.9 NC_005261.1 + 12724 0.67 0.598147
Target:  5'- gGCGCgCgGGcccGC-CGGCCCCcUGGGCGg -3'
miRNA:   3'- -CGCG-GaCCu--CGuGCCGGGGcAUCUGC- -5'
23611 5' -60.9 NC_005261.1 + 13460 0.66 0.696822
Target:  5'- gGCGCCUcGGGguggaagauGCAC-GUCUCGUAGAUGc -3'
miRNA:   3'- -CGCGGA-CCU---------CGUGcCGGGGCAUCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.