miRNA display CGI


Results 41 - 60 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 3' -65.9 NC_005261.1 + 68524 0.67 0.410608
Target:  5'- gCCUgccggcgCCgCCggcgCCCGCGcGCCCCCu -3'
miRNA:   3'- gGGGaaa----GGgGGa---GGGCGC-CGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 67463 0.67 0.410608
Target:  5'- gCCCgcacgCCCgCguacaggaagCCCGCGGCCgCCGc -3'
miRNA:   3'- gGGGaaa--GGGgGa---------GGGCGCCGGgGGC- -5'
23612 3' -65.9 NC_005261.1 + 28408 0.67 0.410608
Target:  5'- cCCCCUccUCCUCCUcuccagggaCCCGCGcGCaCCgCGg -3'
miRNA:   3'- -GGGGAa-AGGGGGA---------GGGCGC-CG-GGgGC- -5'
23612 3' -65.9 NC_005261.1 + 749 0.67 0.410608
Target:  5'- cCUCCUcUCCCgCCUCCCGUuuCCCUCc -3'
miRNA:   3'- -GGGGAaAGGG-GGAGGGCGccGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 821 0.67 0.409801
Target:  5'- gCCCCU---UCCCUCCCGaUGGagagaacCCCCCa -3'
miRNA:   3'- -GGGGAaagGGGGAGGGC-GCC-------GGGGGc -5'
23612 3' -65.9 NC_005261.1 + 7469 0.67 0.405782
Target:  5'- gCCCC---CCCCCaUCCGCGGucuuaucaccgcugcCCCCCu -3'
miRNA:   3'- -GGGGaaaGGGGGaGGGCGCC---------------GGGGGc -5'
23612 3' -65.9 NC_005261.1 + 11577 0.67 0.402585
Target:  5'- gCCCCUUcCCCCCcCCCGCcGUauaCCGc -3'
miRNA:   3'- -GGGGAAaGGGGGaGGGCGcCGgg-GGC- -5'
23612 3' -65.9 NC_005261.1 + 25722 0.67 0.402585
Target:  5'- cCCCCUcUCCCCCcucUCCCacCGGgCCgCGc -3'
miRNA:   3'- -GGGGAaAGGGGG---AGGGc-GCCgGGgGC- -5'
23612 3' -65.9 NC_005261.1 + 33872 0.67 0.402585
Target:  5'- cCCCCgccgCCCgCCUCCgGCGcGUCaCCGg -3'
miRNA:   3'- -GGGGaaa-GGG-GGAGGgCGC-CGGgGGC- -5'
23612 3' -65.9 NC_005261.1 + 74380 0.67 0.402585
Target:  5'- cCCCCg--CCCCCgUCCCcauccCaGUCCCCGu -3'
miRNA:   3'- -GGGGaaaGGGGG-AGGGc----GcCGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 84427 0.67 0.402585
Target:  5'- -gCCg--CgCCCUCCgGCGaccaGCCCCCGg -3'
miRNA:   3'- ggGGaaaGgGGGAGGgCGC----CGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 76351 0.67 0.394662
Target:  5'- cCCCC--UCCCCUcCCCGCGcGCgcgugcaCCCGc -3'
miRNA:   3'- -GGGGaaAGGGGGaGGGCGC-CGg------GGGC- -5'
23612 3' -65.9 NC_005261.1 + 35479 0.67 0.394662
Target:  5'- gUCCCggggUCCCUgCCGCGGCaCCCGc -3'
miRNA:   3'- -GGGGaaagGGGGAgGGCGCCGgGGGC- -5'
23612 3' -65.9 NC_005261.1 + 9696 0.67 0.394662
Target:  5'- aCCCCgcgcuccgCCCCCUCCCcuagcaGCaGCgCUCCGc -3'
miRNA:   3'- -GGGGaaa-----GGGGGAGGG------CGcCG-GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 5994 0.68 0.386841
Target:  5'- uCUCCg---CUCCUCCCGCGGCgagggCUCCGg -3'
miRNA:   3'- -GGGGaaagGGGGAGGGCGCCG-----GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 3030 0.68 0.386841
Target:  5'- uCCCCguccccgUCCCCgUCCC-CG-UCCCCGu -3'
miRNA:   3'- -GGGGaa-----AGGGGgAGGGcGCcGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 3060 0.68 0.386841
Target:  5'- uCCCCguccccgUCCCCgUCCC-CG-UCCCCGu -3'
miRNA:   3'- -GGGGaa-----AGGGGgAGGGcGCcGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 3090 0.68 0.386841
Target:  5'- uCCCCguccccgUCCCCgUCCC-CG-UCCCCGu -3'
miRNA:   3'- -GGGGaa-----AGGGGgAGGGcGCcGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 119526 0.68 0.386841
Target:  5'- gCCCCggUCCCCgCggCCGagcaaGGCCCCg- -3'
miRNA:   3'- -GGGGaaAGGGG-GagGGCg----CCGGGGgc -5'
23612 3' -65.9 NC_005261.1 + 16369 0.68 0.386841
Target:  5'- uCCCCg--CCgCCUUCuCCGUGGgCCUCGc -3'
miRNA:   3'- -GGGGaaaGG-GGGAG-GGCGCCgGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.