miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 3' -65.9 NC_005261.1 + 101072 0.66 0.469416
Target:  5'- gCCCCagcaCCacgCCCGCGGCCgCCUGc -3'
miRNA:   3'- -GGGGaaagGGggaGGGCGCCGG-GGGC- -5'
23612 3' -65.9 NC_005261.1 + 117669 0.66 0.460746
Target:  5'- gCCCCgccgcgCCCggCCgggCCCGCGGCgaggccggCCCUGa -3'
miRNA:   3'- -GGGGaaa---GGG--GGa--GGGCGCCG--------GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 6032 0.66 0.459884
Target:  5'- cCCCCUUcuucuucuccuucUUCUUCUCCCaaaGgGGCCCCuCGu -3'
miRNA:   3'- -GGGGAA-------------AGGGGGAGGG---CgCCGGGG-GC- -5'
23612 3' -65.9 NC_005261.1 + 68841 0.66 0.452162
Target:  5'- gCCC---CCCCgUCCCGCGgggacGCCCUCu -3'
miRNA:   3'- gGGGaaaGGGGgAGGGCGC-----CGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 25935 0.66 0.452162
Target:  5'- gCCCUgcCCCgCCUCCCGUacgcacucacacGGCCggaCCGc -3'
miRNA:   3'- gGGGAaaGGG-GGAGGGCG------------CCGGg--GGC- -5'
23612 3' -65.9 NC_005261.1 + 130275 0.67 0.443666
Target:  5'- gUCCCgcgcgCCCCCgccacgCCCGCacaGCCaCCCa -3'
miRNA:   3'- -GGGGaaa--GGGGGa-----GGGCGc--CGG-GGGc -5'
23612 3' -65.9 NC_005261.1 + 105049 0.67 0.443666
Target:  5'- cCCCCg---CCCCUCCC-CaGCCCUCc -3'
miRNA:   3'- -GGGGaaagGGGGAGGGcGcCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 107874 0.67 0.443666
Target:  5'- gCCCgcgCgCUCgcgCCCGCGGCCCgCu -3'
miRNA:   3'- gGGGaaaGgGGGa--GGGCGCCGGGgGc -5'
23612 3' -65.9 NC_005261.1 + 35894 0.67 0.442821
Target:  5'- cCUCCUaaagaCCCCCg-CCGCGGCagcgcggCCCCGc -3'
miRNA:   3'- -GGGGAaa---GGGGGagGGCGCCG-------GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 31233 0.67 0.43526
Target:  5'- aCCCgCUcUUCCCCgagCCC-UGGCgCCCGg -3'
miRNA:   3'- -GGG-GAaAGGGGGa--GGGcGCCGgGGGC- -5'
23612 3' -65.9 NC_005261.1 + 51087 0.67 0.43526
Target:  5'- gCCCUgUUCCUgCUCgccgUCGCGGCCUuuGa -3'
miRNA:   3'- gGGGA-AAGGGgGAG----GGCGCCGGGggC- -5'
23612 3' -65.9 NC_005261.1 + 52504 0.67 0.43526
Target:  5'- gCCgCCUgUCCCaugaCUCCuUGaCGGCCgCCCGa -3'
miRNA:   3'- -GG-GGAaAGGGg---GAGG-GC-GCCGG-GGGC- -5'
23612 3' -65.9 NC_005261.1 + 3247 0.67 0.426947
Target:  5'- cCUCCUcgUCCCC-CCCGUccCCCCCGu -3'
miRNA:   3'- -GGGGAaaGGGGGaGGGCGccGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 22635 0.67 0.426947
Target:  5'- gCCCCg--UCCCgUCCCuagacgcgcugGCGGCgCCUGg -3'
miRNA:   3'- -GGGGaaaGGGGgAGGG-----------CGCCGgGGGC- -5'
23612 3' -65.9 NC_005261.1 + 62023 0.67 0.426947
Target:  5'- gCgCCgucugCCgUCCUCCCGCGGCUCggCCGg -3'
miRNA:   3'- -GgGGaaa--GG-GGGAGGGCGCCGGG--GGC- -5'
23612 3' -65.9 NC_005261.1 + 132456 0.67 0.426947
Target:  5'- gCCCCUcggCCgCCCUCCgCGCcGGCagcgCCUCGc -3'
miRNA:   3'- -GGGGAaa-GG-GGGAGG-GCG-CCG----GGGGC- -5'
23612 3' -65.9 NC_005261.1 + 10727 0.67 0.426947
Target:  5'- cCCCCUcUUCCUCCg-CCGCcuccucccGGUCCUCGg -3'
miRNA:   3'- -GGGGA-AAGGGGGagGGCG--------CCGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 100089 0.67 0.423648
Target:  5'- gCCCCUcgCCgCCgccgcugccgccgCCCaGCGGCgCCCGc -3'
miRNA:   3'- -GGGGAaaGGgGGa------------GGG-CGCCGgGGGC- -5'
23612 3' -65.9 NC_005261.1 + 81880 0.67 0.418729
Target:  5'- aCCCac-CCgCCC-CCUGCGGCCgCCa -3'
miRNA:   3'- gGGGaaaGG-GGGaGGGCGCCGGgGGc -5'
23612 3' -65.9 NC_005261.1 + 109597 0.67 0.418729
Target:  5'- uUCCCUUcCCCCCccCCCGC-GCUCgCCa -3'
miRNA:   3'- -GGGGAAaGGGGGa-GGGCGcCGGG-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.