miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23612 3' -65.9 NC_005261.1 + 79011 0.74 0.15931
Target:  5'- aCUCCUccUCCCCCUCCuCGCccggGGCgCCCGc -3'
miRNA:   3'- -GGGGAa-AGGGGGAGG-GCG----CCGgGGGC- -5'
23612 3' -65.9 NC_005261.1 + 39424 0.74 0.15931
Target:  5'- aCCCCg-UCCCCCggcgcgUCCGCaGGgCCCCGa -3'
miRNA:   3'- -GGGGaaAGGGGGa-----GGGCG-CCgGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 6508 0.73 0.167033
Target:  5'- cCCCCUUUCCCCCccuccgccugCCCGUuuGCUCCCc -3'
miRNA:   3'- -GGGGAAAGGGGGa---------GGGCGc-CGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 13765 0.73 0.175089
Target:  5'- cCCCCcUUCCCCUUCCC-CG-CCCUCGc -3'
miRNA:   3'- -GGGGaAAGGGGGAGGGcGCcGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 60281 0.73 0.179246
Target:  5'- gCCCggggUCCgCC-CCCGCGGCCCgCa -3'
miRNA:   3'- gGGGaa--AGGgGGaGGGCGCCGGGgGc -5'
23612 3' -65.9 NC_005261.1 + 16323 0.73 0.18349
Target:  5'- gCCC--UCCCCCUCgCCGcCGGUCUCCu -3'
miRNA:   3'- gGGGaaAGGGGGAG-GGC-GCCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 61702 0.73 0.18349
Target:  5'- uCCCCa-UCCgCCCgCCCGUGuGCCCCCc -3'
miRNA:   3'- -GGGGaaAGG-GGGaGGGCGC-CGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 4263 0.72 0.190909
Target:  5'- uCCCCgcgUCCCCCaucUCcggcacgaacacggCCGCGGgCCCCGc -3'
miRNA:   3'- -GGGGaa-AGGGGG---AG--------------GGCGCCgGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 102897 0.72 0.196758
Target:  5'- gCCCCgcgCCCCUggCCCGCaGcGCCUCCGc -3'
miRNA:   3'- -GGGGaaaGGGGGa-GGGCG-C-CGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 32721 0.72 0.199972
Target:  5'- cCCCCg--CCCCCgUCUccguccgcucugcgCGCGGCCCgCCGc -3'
miRNA:   3'- -GGGGaaaGGGGG-AGG--------------GCGCCGGG-GGC- -5'
23612 3' -65.9 NC_005261.1 + 48629 0.72 0.201364
Target:  5'- gCCCCacgCCCCgCcCCUGCgccGGCCCCCGc -3'
miRNA:   3'- -GGGGaaaGGGG-GaGGGCG---CCGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 82426 0.72 0.20989
Target:  5'- gCCCCgccguccgcgCCCCCggccggcCCCGCGccgccguugccGCCCCCGg -3'
miRNA:   3'- -GGGGaaa-------GGGGGa------GGGCGC-----------CGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 129272 0.72 0.215746
Target:  5'- uUCCCgacaagCCCCCgcgccgcCCCGCccGCCCCCGg -3'
miRNA:   3'- -GGGGaaa---GGGGGa------GGGCGc-CGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 78062 0.72 0.215746
Target:  5'- gCCCgg-CCCCCgcgCCgGCccaggcgcuGGCCCCCGc -3'
miRNA:   3'- gGGGaaaGGGGGa--GGgCG---------CCGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 72415 0.72 0.215746
Target:  5'- uCCCCg--CCCUugcgCUCgCCGCGcuuGCCCCCGg -3'
miRNA:   3'- -GGGGaaaGGGG----GAG-GGCGC---CGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 76973 0.72 0.215746
Target:  5'- gCCUguguggCCCCCUUCCGcCGGCUCUCGc -3'
miRNA:   3'- gGGGaaa---GGGGGAGGGC-GCCGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 33645 0.72 0.220732
Target:  5'- aCCCCg--CCCCCgcgcgCgCCGauuuCGGCCCCCc -3'
miRNA:   3'- -GGGGaaaGGGGGa----G-GGC----GCCGGGGGc -5'
23612 3' -65.9 NC_005261.1 + 33188 0.72 0.220732
Target:  5'- gCCCUgcCCCCCgcccgCCCGCGcccuCCCCCc -3'
miRNA:   3'- gGGGAaaGGGGGa----GGGCGCc---GGGGGc -5'
23612 3' -65.9 NC_005261.1 + 102 0.71 0.225816
Target:  5'- cCCCCgggCCCCgCcgCCCGCGccggcgccGCCCCUGg -3'
miRNA:   3'- -GGGGaaaGGGG-Ga-GGGCGC--------CGGGGGC- -5'
23612 3' -65.9 NC_005261.1 + 137785 0.71 0.225816
Target:  5'- cCCCCgggCCCCgCcgCCCGCGccggcgccGCCCCUGg -3'
miRNA:   3'- -GGGGaaaGGGG-Ga-GGGCGC--------CGGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.